Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq25027 187 3e-42 >seq25027 Length=9736 Score = 187 bits (206), Expect = 3e-42 Identities = 592/901 (66%), Gaps = 20/901 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| ||||| | ||||| ||||| || || | |||| ||||| ||||| ||||| || | Sbjct 6305 CATGACTCCGAACTTTTGGTATTCACCGAC-CTTCTTCTCGAAGAAATTCGTCTTCCCCT 6247 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTA-CTACAT 36989 | || || ||| ||||| |||| || ||||| | || || || || | | || | Sbjct 6246 CGAGCGAGATAAACTCCATGAAATTGAAAGGATTTGGCGTGTTGTAGATTTTCTCGAC-T 6188 Query 36990 GATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAG 37049 | ||| ||||| | ||||| |||||||| ||||| |||| |||| || Sbjct 6187 CCCAGCTCCACTAGAAGACGGTCCGCGACAAATTCAATGTAAAAGGACATCAGTTTGCAG 6128 Query 37050 TTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTAC 37108 || || || || | | |||||||| || ||| | ||||| | | || | || | || Sbjct 6127 TTCATGCCGATCATGTCTACTGGAAGAGCGTCTGTCAAGAATTCCTGTT-CAATGACCAC 6069 Query 37109 AGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTA---AATATTT 37165 || || | || | |||||| | ||| ||| || | | | | | ||| Sbjct 6068 GGCTTCACGGATGATTT---CAATAATTCGTTCCTTTGTCGGCTTCTGCACCAAGTGTTT 6012 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 |||| | || || |||||||| || | ||||| |||| |||| |||||| || Sbjct 6011 GAACATGAGGCAAGCGAAATCACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCATTGGA 5952 Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285 ||||| || || ||||||| ||||| ||| || | |||||| || | ||||| ||| Sbjct 5951 GAAGGTCAAACCAGGCATTAGACCTCGTTTCTTTAGCCAAAAGATAGAGGCAAAGCTTCC 5892 Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT 37345 | || || || ||||| || |||||||| || | | |||| || |||||| || Sbjct 5891 ACTGAAAAAGATGCCTTCCACAGCTGCAAAAGCAATCACACGTTCTCC-AAAGTTCGCCT 5833 Query 37346 -ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTT 37404 || | | ||||| || | ||| |||||||| || ||||| | |||| Sbjct 5832 TATCACTGGCGATCCAATTCAAGGCCCAGTCTGCCTTCTTCTTCACACAGGGCAGCGTTT 5773 Query 37405 CAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTT--ATATAAGTATCAATTAG 37462 |||| || || || ||||| | | | || |||| | | | || || |||| ||| || Sbjct 5772 CAATGGCGTTGAACAGAAACTCTCTCTC--CACTGTGTCCTGAATGTACGTATTAATCAG 5715 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | || |||||||||||||| | ||| || ||||| |||||||| || || || ||| Sbjct 5714 AATGCTGTACATTTCAGAGTGTACATTCTCCATAGCGATCTGAAACCCGTAGAAGAACCG 5655 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 ||| || | | || || || | | |||| | | ||||| ||||| || || || Sbjct 5654 AGCCTCGGTGACCTGCACCTCCTGACTGAACCGTTCCACCAAGTTCTCATTCACAATTCC 5595 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAA 37642 ||||| |||||||| || ||||| |||| || ||||| || ||| ||| | Sbjct 5594 GTCACTGGCTGCAAAAAAGGCAAGCACATGGGAAATGAAATGCCTCTCA-CATGGCTGCA 5536 Query 37643 T-TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTG 37701 | || | |||||| || ||||| || || || || || || || ||||| || | Sbjct 5535 TCTTCTCCCAATCGGCCATGTCTTTAGACAAGTCCACCTCTTCCACAGTCCAGAAGGAAG 5476 Query 37702 CCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATC 37761 || || ||| || | |||||| || || | || ||||| ||||| || || | Sbjct 5475 CCTCAGCCTTTTTGTAAAAGTCCCAAATGTCTTTGTACTGAATTGGGAATATCACGAACC 5416 Query 37762 T 37762 | Sbjct 5415 T 5415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591999273771440