Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq36862 96.9 5e-15 >seq36862 Length=1067 Score = 96.9 bits (106), Expect = 5e-15 Identities = 308/470 (66%), Gaps = 6/470 (1%) Strand=Plus/Plus Query 197110 CCGTAGGTTCCCGTTCTCTTTCCCACCCCGTTGAAGCCTCCGATAACCACCAGATCCAGA 197169 || || ||||| |||||||| ||| || || | || || || || || | ||| || Sbjct 519 CCATAAGTTCCGGTTCTCTTCCCCTTTCCTCTGTATCCGCCAATTACTACTAAATCGAGG 578 Query 197170 GTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTGAGCCAGCTTCTAGATCTCTTG 197229 | || | ||| || || |||||||| || ||||| | ||| | || |||| || Sbjct 579 GAATCTCCCACTCCAGACAAATAATCTTTTTTAAGTTTCAACCAATTCCTTGATCGTTTT 638 Query 197230 GCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATCATCAATCCCTCGCAATCTTCC 197289 || || || ||||| |||| | | || || || | ||||||||| ||||||| | | Sbjct 639 GCGATTTCATAGGTAGCGTCTTTTTTCAAAGTTTTCACCATCAATCCTTCGCAATTTCCT 698 Query 197290 TTCACGGCCTTGTTCATGAAAGTTTGAATGTCTTCCGGTTTGTTAGACATCATATCTCGC 197349 || || | || | || || | ||| | || | | | | | ||| | ||| Sbjct 699 TTAACAGACTCATCCAAAAAGGATTGCAACTCGTTTAAATCGCTCGT-ATCTAAATTCGT 757 Query 197350 -GCGAAGATAAATTGTCCCTCCACCTCCGTAAAACAACTCCTCATAAGTTCCCTCCTCTC 197408 || || | | ||| ||||| || |||| | | | ||| || || | ||| Sbjct 758 TGCAAACTTCCAAACTCCTTCCACTTCTATAAAGTGTTCCTTTAAAAGCTCTCTTCGCTC 817 Query 197409 TCTGAA-GCTCTTGTTGACCTGAGACACTCCGTTCATGTACAACACGTCAAAAGCAAAGA 197467 || | | ||||| ||| | | |||| || | ||||||| ||||| ||| Sbjct 818 CAAAAACGGTTTTGTT-ACCAATGGCTCTCCATTTAAATACAACAAATCAAACATGTAGA 876 Query 197468 CGCACACCTGGACGGTTATCTCTTCTTCCTTGACATCTTTACGTTTTCTGGT-CGCCAGC 197526 | ||||||||||| | || || | || ||| ||||||| || |||| || | | || Sbjct 877 CACACACCTGGACCTTAATTTCCGCCTCATTGGCATCTTTCCGCTTTCGAGTGCTCAAGA 936 Query 197527 TTTTGAAAGGGAAGGATCTGCTTCTTCTCAACGTCCCAAGCAACTGCCTC 197576 || |||| || ||||||||||||||||| || ||||| ||||||||||| Sbjct 937 CTTGGAAA-GGTAGGATCTGCTTCTTCTCCACATCCCACGCAACTGCCTC 985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676366822179680