Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq25027 217 3e-51 >seq25027 Length=9736 Score = 217 bits (240), Expect = 3e-51 Identities = 564/851 (66%), Gaps = 9/851 (1%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || || || | ||||| ||||| || ||||||||||| | |||||| |||| Sbjct 6289 TGGTATTCACCGACCTTCTTCTCGAAGAAATTCGTCTTCCCCTCGAGCGAGATAAACTCC 6230 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTC-AGGCCCATCTGTTCCAGCAG 47958 ||||| ||| || || || ||||| || | | || | |||| || | || || Sbjct 6229 ATGAAATTGAAAGGATTTGGCGTGTTGTAGATTT-TCTCGACTCCCAGCTCCACTAGAAG 6171 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | |||||||| | || ||||| ||||| || || ||||||||| || | | Sbjct 6170 ACGGTCCGCGACAAATTCAATGTAAAAGGACATCAGTTTGCAGTTCATGCCGATCATGTC 6111 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || || | ||| | ||| | || |||| || || ||||||||| | | || | Sbjct 6110 TACTGGAAGAGCGTCTGTCAAGAATTCCTGTTCAATGACCACGGCTTCACGGATGATTTC 6051 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGG-CATAGAGCATGCAGGCAA 48137 ||| || || || || || | || ||| ||| ||| ||| ||| || | Sbjct 6050 AATAATTCGTTCCTTTGTCGGCTTCTGCACCAAGTGTTTGAACAT-GAG---GCAAGCGA 5995 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 | || | ||||| |||||||| || || || | ||||||||| | |||||||| Sbjct 5994 AATCACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCATTGGAGAAGGTCAAACCAGGCA 5935 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 | | || | | || ||||| || || | || || ||| ||| |||||||| | Sbjct 5934 TTAGACCTCGTTTCTTTAGCCAAAAGATAGAGGCAAAGCTTCCACTGAAAAAGATGCCTT 5875 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGG 48317 |||| || || || || | | | ||||| || || || | | |||||| Sbjct 5874 CCACAGCTGCAAAAGCAATCACACGTTCTCCAAAGTTCGCCTTATCACTGGCGATCCAAT 5815 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT 48377 | |||||||||||||||||||| | || |||| ||| || ||||| ||| || Sbjct 5814 TCAAGGCCCAGTCTGCCTTCTTCTTCACACAGGGCAGCGTTTCAATGGCGTTGAACAGAA 5755 Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGT 48437 || | ||| ||| |||| || || ||| | | ||| | |||||| ||||||| Sbjct 5754 ACTCTCTCTCCACTGTGTCCTGAATGTACGTATTAATCAGAATGCTGTACATTTCAGAGT 5695 Query 48438 GCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTT 48497 | |||||||| ||||||||||| |||||||||||| || ||||| |||||||| | Sbjct 5694 GTACATTCTCCATAGCGATCTGAAACCCGTAGAAGAACCGAGCCTCGGTGACCTGCACCT 5635 Query 48498 CTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGG 48557 | ||| | |||| || |||||||| || || || || || ||||| |||| Sbjct 5634 CCTGACTGAACCGTTCCACCAAGTTCTCATTCACAATTCCGTCACTGGCTGCAAAAAAGG 5575 Query 48558 CAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTG-AGAGCATTCCAGCCCTGTACG 48616 |||| ||||| || |||||| | ||| ||| || | | ||| | | | Sbjct 5574 CAAGCACATGGGAAATGAAATGCCTCTC-ACATGGCTGCATCTTCTCCCAATCGGCCATG 5516 Query 48617 TCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATG 48676 ||||| || |||||| |||||||||||||||||||| || || |||||||| | | Sbjct 5515 TCTTTAGACAAGTCCACCTCTTCCACAGTCCAGAAGGAAGCCTCAGCCTTTTTGTAAAAG 5456 Query 48677 CCCCATATGTC 48687 |||| ||||| Sbjct 5455 TCCCAAATGTC 5445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931033428554240