Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq25027 154 3e-32 seq11803 109 1e-18 seq25828 100 5e-16 >seq25027 Length=9736 Score = 154 bits (170), Expect = 3e-32 Identities = 553/862 (64%), Gaps = 19/862 (2%) Strand=Plus/Plus Query 25469 ACAAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGA 25528 ||||||| || ||||| | ||||| |||||| | || |||||| | |||||| Sbjct 5440 ACAAAGACATTTGGGACTTTTACAAAAAGGCTGAGGCTTCCTTCTGGACTGTGGAAGAGG 5499 Query 25529 TTGATCTGGCCAAGGACATGGACGGCTGGTAC--GCTCTATCCAAAGACGAGCAGCATTT 25586 | || || | || ||||||| || ||| | | | | ||| ||| |||||| Sbjct 5500 TGGACTTGTCTAAAGACATGGCCGATTGGGAGAAGATGCAGCCATGTGAGAG--GCATTT 5557 Query 25587 TCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTG 25646 | | ||| | || || ||||||||| ||| || || ||||| ||||| || Sbjct 5558 CATTTCCCATGTGCTTGCCTTTTTTGCAGCCAGTGACGGAATTGTGAATGAGAACTTGGT 5617 Query 25647 CGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || | |||| ||| |||||| | ||||| || |||||||| || ||||| Sbjct 5618 GGAACGGTTCAGTCAGGAGGTGCAGGTCACCGAGGCTCGGTTCTTCTACGGGTTTCAGAT 5677 Query 25707 GGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGA---CGTACATTAC 25763 || || || ||||| |||||||| |||| || ||||||| | |||||||| Sbjct 5678 CGCTATGGAGAATGTACACTCTGAAATGTACAGCA---TTCTGATTAATACGTACATTCA 5734 Query 25764 AGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAG 25823 ||| | |||||||| ||||| ||||| || | ||| | | |||| Sbjct 5735 GGACACAGTGGAGAGAGAGTTTCTGTTCAACGCCATTGAAACGCTGCCCTGTGTGAAGAA 5794 Query 25824 GAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCT 25883 |||||| |||||| |||| |||||| ||| | | || | ||||| || || | Sbjct 5795 GAAGGCAGACTGGGCCTTGAATTGGATCGCCAGTGATAAGGCGAACTTTGGAGAACGTGT 5854 Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTG 25943 | | || ||||| |||||||| |||||||||||||| || ||||| | ||||| || Sbjct 5855 GATTGCTTTTGCAGCTGTGGAAGGCATCTTTTTCAGTGGAAGCTTTGCCTCTATCTTTTG 5914 Query 25944 GCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 ||| ||| | | | || | ||||| || || ||| ||||| || || || | | Sbjct 5915 GCTAAAG-AAACGAGGTCTAATGCCTGGTTTGACCTTCTCCAATGAACTGATTTCACGAG 5973 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062 |||| || || ||| | ||||| || ||||| | | || |||||| | || || | Sbjct 5974 ACGAAGGACTGCACTGTGATTTCGCTTGCCTCATGTTCA---AACACTTGGTGCAGAAGC 6030 Query 26063 CTTCTCAAGAGACCGTCTACAG-TATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTT 26121 | | ||| || || | |||||| || || |||| || || |||| || Sbjct 6031 CGAC-AAAGGAACGAATTATTGAAATCATCCGTGAAGCCGTGGTCATTGAACAGGAATTC 6089 Query 26122 CNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATAC 26181 | ||||||||| || ||| ||| | ||| Sbjct 6090 TTGACAGACGCTCTTCCAGTAGACATGATCGGCATGAACTGCAAACTGATGTCCTTTTAC 6149 Query 26182 ATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTAC 26240 ||||| | ||| || |||| ||| || ||| |||||||| ||| | | |||||| || Sbjct 6150 ATTGAATTTGTCGCGGACCGTCTTCTAGTG-GAGCTGGGAGTCGAGAAAATCTACAACAC 6208 Query 26241 GCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGA 26300 ||| || || ||| | || ||||| || ||| | || |||||||| || ||||| || Sbjct 6209 GCCAAATCCTTTCAATTTCATGGAGTTTATCTCGCTCGAGGGGAAGACGAATTTCTTCGA 6268 Query 26301 AAAGAGGGTCGGCGACTATCAA 26322 |||| |||||| || || ||| Sbjct 6269 GAAGAAGGTCGGTGAATACCAA 6290 >seq11803 Length=6467 Score = 109 bits (120), Expect = 1e-18 Identities = 131/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 222023 TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTG 222082 || |||| ||||||| |||||| | ||| || ||||| || || | ||| | ||||||| Sbjct 6213 TTCTCTTCTACCCTCTTCATGAACAAGTCTGGAATCCATAGGGCGTAAAACAAATCTCTG 6154 Query 222083 GTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCG 222142 | || | || ||| || | |||||| |||| | || ||| ||||||||||| || Sbjct 6153 GCGCGATATTCTTCCTTTCCCGTATTTTTCTTCAGGTTCAGAAAATCAAAAATGTCTGCA 6094 Query 222143 TGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCA 222200 |||||||| |||| || || ||| |||||||||| ||||| || || || |||| Sbjct 6093 TGCCACGGTTCCACGTAAACTGCCCATGCGCCGGGTCTTTTGTTCCCGCCTTGGTCCA 6036 >seq25828 Length=6072 Score = 100 bits (110), Expect = 5e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 221999 GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058 |||||||||| | ||| | || |||| ||||||| |||||| | ||| || ||| Sbjct 5399 GGACACATCAAGCACCATTCGCCATTCTCTTCCACCCTCTTCATGAACAAGTCTGGAATC 5340 Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118 || || || | ||| | |||||| | || | | ||| | || | || ||| | | | Sbjct 5339 CAAAGAGCGTAAAATAAATCTCTAGCTCGTTCTTTTTCCTCTCCTGTATTCTTCTTTAAA 5280 Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178 | ||| || ||||| ||||| || ||||||||||| | ||| | |||| || |||||| Sbjct 5279 TTCAAGAAATCAAATATGTCGGCATGCCACGGCTCTAAATAAATGGCCCAGGCCCCGGGT 5220 Query 222179 CGCTTGTTGCCACCCTGATCCAC 222201 | ||||| || || |||||||| Sbjct 5219 CTTTTGTTTCCGCCTTGATCCAC 5197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928346869523840