Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq25828 114 7e-21 seq11803 84.2 1e-11 >seq25828 Length=6072 Score = 114 bits (126), Expect = 7e-21 Identities = 228/337 (68%), Gaps = 8/337 (2%) Strand=Plus/Minus Query 25906 CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAA 25965 ||| || |||| | || || ||| ||| || || ||||||||||| | || ||||| Sbjct 5385 CCATTCGCCATTCTCTTCCACCCTCTTCATGAACAAGTCTGGAATCCAAAGAGCGTAAAA 5326 Query 25966 TAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAA 26025 ||||||||| |||| || ||| | ||| |||||| |||| || ||||||||||| Sbjct 5325 TAAATCTCTAGCTCGTTCTTTTTCCTCTCCTGTATTCTTCTTTAAATTCAAGAAATCAAA 5266 Query 26026 AATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACC 26085 || || | ||||| || |||||||| || || | || |||||| ||| || Sbjct 5265 TATGTCGGCATGCCACGGCTCTAAATAAATGGCCCAGGCCCCGGGTCTTTTGTTTCCGCC 5206 Query 26086 TTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGA 26145 |||||| || |||| || | | ||| | | |||||||||||| || | ||| || Sbjct 5205 TTGATCCACATATCGGGCCATGTTATTATATAATTTCAACATTGGTACAAGGCCATCGGA 5146 Query 26146 AAATCCGTTTGT----GCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAA 26201 ||||| ||| | || ||| | || ||| | | || ||| |||| ||| | Sbjct 5145 GAATCCATTTATTCCGGCGATGTAGCT----TCCCTTGGCTCGAATGCAGTGAACATTCA 5090 Query 26202 TACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA 26238 || |||||||| || | ||||| || |||||| Sbjct 5089 CGCCAATTCCACCCGCTGACTTTGATATCAATGCACA 5053 >seq11803 Length=6467 Score = 84.2 bits (92), Expect = 1e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 25906 CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAA 25965 ||||||| |||| | || || ||| ||| || || ||||||||||| | || ||||| Sbjct 6223 CCAATCACCATTCTCTTCTACCCTCTTCATGAACAAGTCTGGAATCCATAGGGCGTAAAA 6164 Query 25966 TAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAA 26025 |||||||| || | |||||| ||||| ||| || || || | | |||||||| Sbjct 6163 CAAATCTCTGGCGCGATATTCTTCCTTTCCCGTATTTTTCTTCAGGTTCAGAAAATCAAA 6104 Query 26026 AATATCTGAGTGCCATGGTTC 26046 ||| |||| ||||| ||||| Sbjct 6103 AATGTCTGCATGCCACGGTTC 6083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252907742792450