Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq21176 114 1e-20 >seq21176 Length=21820 Score = 114 bits (126), Expect = 1e-20 Identities = 496/777 (64%), Gaps = 12/777 (2%) Strand=Plus/Minus Query 138158 TACAAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCC 138217 || |||||| | ||||||| || ||||||||||| | || |||||||| ||||| Sbjct 11760 TAAAAATGGAGCTAGATGTTCCTTAACTCCAATAGGACCCATTCCTGGACCTCCTCCTCC 11701 Query 138218 ATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACA 138277 || ||||||||||| || || || ||||||| ||| | ||||| |||||||| | Sbjct 11700 GTGAGGAATACAGAAAGTTTTGTGCAAATTTAAATGCGAAACATCACTTCCATAGTCTCC 11641 Query 138278 TGGTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACC 138337 || || || || || || || | || || ||||| || || || ||||| || Sbjct 11640 AGGACGACAAAGTCCCACTTGGGCGTTCATGTTAGCTCCATCAAGGTAAACTTGACCTCC 11581 Query 138338 ATTGTCATGAAC--GATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTC 138395 || | |||||| ||| | ||||| | | | | | || ||||| |||| ||| Sbjct 11580 ATGCTGATGAACCATATCGCAAATATCAGCC--ACGGTCTCCTCGAATACTCCATTAGTA 11523 Query 138396 GATGGATATGTAATCATAATACATG--AGAGTTC--AAATGTATTCATGATTGCTTTCTT 138451 ||| || || ||||| | || | | | ||| ||||| | | ||| |||| | Sbjct 11522 CTTGGGTAAGTGATCATTAAGCAGGAAACATTTCTGGAATGTTGTTCTAATT--TTTCCT 11465 Query 138452 CTCTAGATCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCAT 138511 || || | || |||||| | ||||| | | |||| | || || ||||| Sbjct 11464 -TCAAG-TGGACCATATCTATGCTTCCATCGTTGCAAATTTTGATAGCTTGTACCTTCAT 11407 Query 138512 TCCTGCCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATAC 138571 ||||||||| || |||||| ||||||||||| || || || || ||||| | Sbjct 11406 TCCTGCCATTTGAGCTGAAGCAGGGTTAGTTCCATGAGCAGAGATGGGAATTAGACAAAT 11347 Query 138572 ATTTCTTTTATCATCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATA 138631 | ||| || | |||||| ||| || || || | || ||| ||||| || || Sbjct 11346 AGTTCGATTGTGTTCTCCTTTCGCTTCGTGGAATCCTCGAATCGCTCGAAGTCCCGCGTA 11287 Query 138632 CTCACCCTGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACA 138691 || || || | || ||| ||||| || || || |||| |||| || || ||||| Sbjct 11286 TTCCCCTTGAGCGCCGCTGTTGGGTTGGAAAGAGATTCTATCATAACCAGTAATCTCACA 11227 Query 138692 TAACCATTTCTGTAAGTCATCTATTATCTTTTGATAACCCATGGTCTGTATCATAGGTGT 138751 | |||| || |||| | |||| || || ||| | | || || ||| | Sbjct 11226 AAGGTCCTTCTCCAATTCATTGAACATCTGATGGTATCCCTTAGCTTGATCCAAAGGCGC 11167 Query 138752 ATGTGGATGCACGTTGGCAAATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATT 138811 | ||||| | | | ||| | | | || ||| |||| ||||| || | ||| Sbjct 11166 AAAAGGATGAATTTCTGTAAAATGTCTAAAAGAACAAGGAATCATTTCTGTTGTGGAATT 11107 Query 138812 TAGTTTCATTGTGCAACTACCAAGTGGAACCATACCATTTACTAATGAGAAATCTTTAGA 138871 | |||||||||||| || | |||| ||| || || || || | ||| ||| Sbjct 11106 CAACTTCATTGTGCAAGATCCCAAAGGAATCATGGAATGGACCAAAGATATATCCTTATT 11047 Query 138872 GCATAACTCATAGATATATCTCATCATGTCAGTTTCACTGTGATACTTATTGAATAC 138928 |||| | |||||||| | ||| || ||| ||||| | ||| || || || Sbjct 11046 CTCCAACTGCTTCATATATCTAACCATCCTAGATTCGCTGTGGTGCTTGTTAAACAC 10990 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| || ||||| || || ||| ||||||| |||| ||| ||||| || || || || Sbjct 7647 CATAGCTTCTGCGGCAGCTGTTCCTTCATCCAATAAAGAGGCGTTGGCAATGTCCAAACC 7588 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||| | ||| | || | || ||||| || || |||| |||||| | ||| || | ||| Sbjct 7587 TGTTAATTCAGAGACCAAAGTCTGGTAGTTCAACAAAGATTCCAACCGTCCTTGGGCTAT 7528 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAA 140025 ||||| ||||||||||||||| ||| ||| | |||||| |||| Sbjct 7527 CTCAGGTTGATAGGGAGTGTATTGCGTGGTCCATCCAGGATTTTCAA 7481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578688013432720