Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq42127 140 4e-28 >seq42127 Length=1170 Score = 140 bits (154), Expect = 4e-28 Identities = 261/382 (68%), Gaps = 6/382 (2%) Strand=Plus/Plus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || |||||||| ||||| || | ||| | |||||| ||||| | |||||| ||||| Sbjct 575 CCGGTGGCAATCACAAAGTCCTGAGGCTGAGGTTGTTGCAGCATCATCCACATTGCCTCT 634 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 || || ||| ||||||| |||||||| || | || | ||| || | | || | Sbjct 635 ACGTAGTCTTTGGCATGGCCCCAGTCTCGCTTAGAGTCTAAATTGCCCAATTCGAACGAT 694 Query 47908 TC---TTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAA 47964 || ||| || | ||||||| | | | || |||||||| | || || ||| Sbjct 695 TCGATTTGATT---TAGAGAGATTTTTGCAACGGACCTGGTAATCTTTCTGGTCACGAAA 751 Query 47965 GTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCG 48024 | || || | | || ||||||||||| || ||||||||| ||||||| |||| | Sbjct 752 TTCTCTCCTCTCCGCGGCGATTCATGATTGAAGAGAATACCATTACAGGCGAACATATTG 811 Query 48025 TATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGA 48084 || | || | ||||| ||| |||||| |||| || | ||| ||| | |||| || Sbjct 812 TAGGCCTCTCTGTAGTTGACTACGATCCAGAACCCGTACATTTTGGCACAAGCATAGGGC 871 Query 48085 GAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGT 48144 || ||||| ||||| || || |||| || || || || ||| ||| || || || ||| Sbjct 872 GACCGTGGGTAGAACGGCGTTTTCTCAGTTTGGGGCGTTTCTACCACTTTTCCGTACAGT 931 Query 48145 TCACTGGTGGATGCTTGATAGA 48166 || ||||| || ||||||| Sbjct 932 TCTGACGTGGACGCCTGATAGA 953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665137645089520