Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq21073 118 3e-21 seq5269 113 1e-19 seq25027 107 6e-18 seq5666 86.0 2e-11 >seq21073 Length=11356 Score = 118 bits (130), Expect = 3e-21 Identities = 426/653 (65%), Gaps = 19/653 (3%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| | ||||| ||||| ||||||| ||||||| ||| || | ||| | || Sbjct 4581 GGCGATTAAGCCACAGAAGTTACAAACATGGATTCTGTAAGGATCTGACACTTCAAAGAG 4522 Query 251463 CCGA-CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCAC 251521 || ||||| | ||| | | ||| ||||| | |||| |||||| || ||||| || | Sbjct 4521 ACGCTCCCTTAG-GAACTGCGCTGCTCCGTGGGCAATCTGACAATCTCGTTCCATCTCTC 4463 Query 251522 CGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCA 251581 ||||||||||||| ||||| | || | |||||| ||||||||| ||| | || Sbjct 4462 CGAAACGAAGACCTCCATCCCTGGCACGACCCTCCATAGGCTGACGGACCAGAATCTGCA 4403 Query 251582 TAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGA 251641 ||||| | | | ||| |||||||| ||||| ||||| | ||| || || Sbjct 4402 CTGGACCTCTCGCTCTCGAATGAATCTTATCATCCACCATGTGCTTCAAACGTTGATAAT 4343 Query 251642 ATGCGGGACCGATGAAGATGCTCGAAGGCATT----TGCTCTCCAGTTAGAGCGTTATAC 251697 | | || || | ||| | || | |||||| | | ||| || | | |||||| Sbjct 4342 AAGTCGGTCCCAAGAAAA--CTTG--GGCATTAATCTTCCTTCCTGTATGCCCATTATAC 4287 Query 251698 ATAACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCT-CTGA-AGCAATATCAC 251755 || || || ||||| | | | |||||| | ||| || |||| || | | | Sbjct 4286 ATCACCTCATTTCCTCTCAAATGATAACCGTACTCCTGCAGGAACTGAGAGATCTTTTGC 4227 Query 251756 CAATCTTGAATTTGCTAAAACTG-GTGCCGTCTCCGTAAAGACCCATTTGAATCAACACT 251814 || | | | |||| | ||| | || || || | | |||| ||| | Sbjct 4226 ACATTGACAGCATCGTTAAACGGAGTGGCATCACC--AATCTCACCTTTGTTCGAACCCA 4169 Query 251815 --TTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGG 251872 |||||| ||| ||| | | || | || ||||||||| ||||| || |||| Sbjct 4168 ACTTGCCTTGAAGACACTCAATTAAATGCCCAATGGTCATACGAGATGGAATGGCGTGGG 4109 Query 251873 GATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAA 251932 |||||||||| || || || | | ||| ||| ||||| |||||||||| || | | | Sbjct 4108 GATTGATGATAATATCTGGAGTAATTCCCTCACAGGTGAAAGGCATATCCTCTTGC-CTA 4050 Query 251933 TAATG-TTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAATAACA 251991 || || ||||| ||||| || |||||||| ||||| ||||| || ||||| Sbjct 4049 TACTGAATTCCACACGTTCCTTTCTGTCCGTGCCGAGACGCAAACTTGTCTCCAATCTGC 3990 Query 251992 GGACGGCGAACACTACGAAGGCGAACCTTACAGAAGTTGTAACCATCACCGTT 252044 ||| ||||| || | |||| |||||||| || ||||| |||| ||| Sbjct 3989 GGAATTCGAACTGATCGCACTCGAATTTTACAGAACTTATAACCCTCACTGTT 3937 >seq5269 Length=17594 Score = 113 bits (124), Expect = 1e-19 Identities = 190/272 (70%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 ||||| |||||| ||||| || ||||||||||||||| | ||| |||||||| ||| Sbjct 13598 TCCATCGCCTTGATCAAACGTCGTTGAATATAACCAGTTTCGGCTGTCTTTACAGCAGTA 13539 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| | | || ||||| || ||||| | | |||| ||| || || Sbjct 13538 TCGATGAGACCTTCTCTTCCTCCCATGGCGTGGAAATAAAACTCTGACGGAGTTAAACCG 13479 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | || | || |||||||| | | |||||| || ||||||| ||| | Sbjct 13478 GCAAGGTACGAATTTTCTACGAAACCCCTAGACTCGGGACCGTAATCGTCT---TTGATG 13422 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || || ||||| || || | | || | || || |||||||| |||||||||||| Sbjct 13421 AAATGAGGAAGGGTTCTCTTTCTAAACCCAAAAGGAATTCGCTTTCCTTCAACGTTCTGC 13362 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||||| | || | ||| | ||| || || || Sbjct 13361 TGTCCTACACAAGCAATAACCTGGGAGATGTT 13330 Score = 89.7 bits (98), Expect = 2e-12 Identities = 105/139 (76%), Gaps = 5/139 (4%) Strand=Plus/Minus Query 301815 AATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAA 301873 |||||| |||||| | || |||||| |||||||||| || |||| || || |||| Sbjct 14540 AATTTCCTTCAAT-CTTGGCACACCAAGGGTTACGTTT---TTCGACGACACTCCCGCAA 14485 Query 301874 AGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCA 301933 | ||||||||||||| || | ||||||| |||||||| | |||||| || || | Sbjct 14484 AATGGAAAGTATTCAATGTCATCTGAGTAGCAGGCTCACCCAAACTTTGAGCAGCTAAGG 14425 Query 301934 TACCAACCATTTCTCCTGG 301952 || |||||||||||||| Sbjct 14424 CTCCCACCATTTCTCCTGG 14406 >seq25027 Length=9736 Score = 107 bits (118), Expect = 6e-18 Identities = 293/441 (66%), Gaps = 12/441 (3%) Strand=Plus/Plus Query 133211 CATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAA 133269 ||||| ||||| ||| || || |||||||| || ||||| || ||||| ||| || Sbjct 5553 CATTTCATTTCCCATGTGCTT-GCCTTTTTTGCAGCCAGTGACGGAATTGTGAATGAGAA 5611 Query 133270 TTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCT 133329 || | |||||| | || || || | |||| || || ||| || ||| | Sbjct 5612 CTTGGTGGAACGGTTCAGTCAGGAGGTGCAGGTCACCGAGGCTCGGTTCTTCTACGGGTT 5671 Query 133330 ACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACAT 133389 ||||| || ||||| ||| | || ||| | || | ||| ||| |||| ||||| Sbjct 5672 TCAGATCGCTATGGAGAATGTACACTCTGAAATGTACAGCATTCTGATTAATACGTACAT 5731 Query 133390 CAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT--AGCGAATTTCCTTGTATT 133447 | || || || ||| | || |||||||||||| | || | || ||| | Sbjct 5732 TCAGGACACAGTGGAGAGAGAGTTTCTGTTCAACGCCATTGAAACG--CTGCCCTGTGTG 5789 Query 133448 AAAAAGAAATCTGACTGGGCTATTAAATGGAT--CCAG-GACAAGCGTGCGAGTTTTGCT 133504 || ||||| | |||||||| | || ||||| |||| || ||| |||| |||| Sbjct 5790 AAGAAGAAGGCAGACTGGGCCTTGAATTGGATCGCCAGTGATAAG---GCGAACTTTGGA 5846 Query 133505 ACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCT 133564 ||| | |||||||||| | || || ||||| ||||||||||| || |||| Sbjct 5847 GAACGTGTGATTGCTTTTGCAGCTGTGGAAGGCATCTTTTTCAGTGGAAGCTTTGCCTCT 5906 Query 133565 ATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATT 133624 || |||||||| || || || ||| | | ||||| || || || || ||||| ||| Sbjct 5907 ATCTTTTGGCTAAAGAAACGAGGTCTAATGCCTGGTTTGACCTTCTCCAATGAACTGATT 5966 Query 133625 TCAAGGGACGAGGCACTTCAC 133645 ||| | ||||| | ||| ||| Sbjct 5967 TCACGAGACGAAGGACTGCAC 5987 >seq5666 Length=50473 Score = 86.0 bits (94), Expect = 2e-11 Identities = 222/335 (66%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 ||||| |||| |||||||| ||||||||||| || | | ||| || | | || || Sbjct 40190 CTTTTCCTACCGACAGCATCGATTTCGTCAATAAACAAAATACAAGGTGCCTGTTTCCTG 40249 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || || || || | ||||| || || || | || | |||||| |||| || | ||| Sbjct 40250 GCCATGGCGAACATGTCTCTAACTCGAGAAGGACCCACGCCAACAAACATCTCCAAAAAC 40309 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || || | ||||| || || | ||||| || || || || ||| | || | | Sbjct 40310 TCGGATCCAGATACAGTTATAAAGGGAACATTAGCCTCCCCAGCGGTCGCCTTGGCTAAA 40369 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCC 289259 ||||| ||||| ||||| || || || || | |||||||||| | ||| || ||| Sbjct 40370 AGTGTTTTACCAGTTCCCGGAGGACCAGTCAACATCGCTCCCTTTGGAATTTTCGCTCCC 40429 Query 289260 AGCAGAC-TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATT 289318 | || | | || | || || | || | || | ||||| ||| || ||| || Sbjct 40430 A--AGTCAATGTACTGCTGTGGATTTTTCAGGAAATTTACAAACTCCATAATTTCTATTT 40487 Query 289319 TTGCCTCATCACATCCTGCTACATCAGCAAAAGTA 289353 |||| || || ||||| || || || ||||||| Sbjct 40488 TTGCTTCTTCGCATCCAGCAACGTCCCTAAAAGTA 40522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471008870264582