Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1166 118 1e-20 seq25027 96.9 4e-14 >seq1166 Length=27534 Score = 118 bits (130), Expect = 1e-20 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||| || |||||||| || |||||||| || || | | ||||| ||| | Sbjct 23024 AGAAGCGGACGGACGACATTTCCTCGTGGGACGCCGACTTCCTCAAGGTCGACCAGGGAA 22965 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | | |||||| | || | ||||| || ||||||||||||||| || | ||| | Sbjct 22964 CTTTGTTTGAGCTCATTTTGGCCGCGAATTACCTCGACATCAAGGGGCTTTTGGATGTGA 22905 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 ||||| ||||||||||||||||||| || ||| | || || |||||| | ||||| | Sbjct 22904 CCTGCAAAACTGTGGCCAACATGATCAAAGGAAAGACTCCGGATGAGATCAGGAAGACGT 22845 Query 1592286 TTAACATCAAGTACG 1592300 | ||||||||| ||| Sbjct 22844 TCAACATCAAGAACG 22830 >seq25027 Length=9736 Score = 96.9 bits (106), Expect = 4e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776 |||||| || || ||||| |||||||||||||| |||||||| | ||| || || || Sbjct 6269 CTCGAAGAAATTCGTCTTCCCCTCGAGCGAGATAAACTCCATGAAATTGAAAGGATTTGG 6210 Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836 ||| |||||| || ||| ||| ||| | | || || ||||| |||||||| || || Sbjct 6209 CGTGTTGTAGATTTTCTCGACTCCCAGCTCCACTAGAAGACGGTCCGCGACAAATTCAAT 6150 Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||| | |||| || | |||||||||||| Sbjct 6149 GTAAAAGGACATCAGTTTGCAGTTCATGCCGAT 6117 Score = 86.0 bits (94), Expect = 8e-11 Identities = 152/221 (69%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || |||| ||| ||| |||| | || ||||| || || || ||| Sbjct 5980 CCTTCGTCTCGTGAAATCAGTTCATTGGAGAAGGTCAAACCAGGCATTAGACCTCGTTTC 5921 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||||||||| | | || || || |||||||||||| || || || ||||| Sbjct 5920 TTTAGCCAAAAGATAGAGGCAAAGCTTCCACTGAAAAAGATGCCTTCCACAGCTGCAAAA 5861 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCC--CTCCTTGTTGATCCACTTCATCGCCC 869357 | || | || || ||||| | ||| || || |||||| |||| |||| Sbjct 5860 GCAATCACACGTTCTCCAAAGTT-----CGCCTTATCACTGGCGATCCAATTCAAGGCCC 5806 Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 |||| ||||| ||| |||| | |||| ||| || |||||| Sbjct 5805 AGTCTGCCTTCTTCTTCACACAGGGCAGCGTTTCAATGGCG 5765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103619774004862