Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq35853 219 4e-52 seq25828 197 1e-45 seq22640 136 4e-27 seq19288 123 2e-23 >seq35853 Length=3953 Score = 219 bits (242), Expect = 4e-52 Identities = 375/536 (70%), Gaps = 6/536 (1%) Strand=Plus/Plus Query 138154 TTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCC 138213 ||||| || ||||| | || || | | || |||||||||| | ||||||||||||| Sbjct 3363 TTATCGACTGTAAATTGAATTGCGTTTACAGCAGGTTTCGTTCGTAAATAATACATTCCC 3422 Query 138214 GTTTTTA-ACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272 || || | |||| ||| ||| | || | ||| |||||||| || ||||| |||| Sbjct 3423 GTCTTCAGTCCCAGTTT-CCATCCATAGAAGTGAATCGAAGTTAGCTTTCCGTAATTCGG 3481 Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGC 138332 | || | |||||||| || || || ||||| || || || ||||||||| || Sbjct 3482 TGCAGCGACGTGAATGTTAAAAGACTGGCTTTGATCAATAAAGGCTCCTCGATCAGCAGC 3541 Query 138333 CATGTTAATT-AAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATAT 138391 |||||| ||| | ||||||| | || |||||||| || || || ||| | ||||| | Sbjct 3542 CATGTTGATTGTAGTTTTTAC-ACTAATTTCCCACACAGTTTTATAAAGAGCTCGAATGT 3600 Query 138392 GTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCA 138451 | || ||| | |||||||||||| || ||| |||||||| || ||| Sbjct 3601 CTTCAGGAATTTCCTCTATATTTTGAATGGATCCATTGTGTGCAATGATTTTGTTCTTCA 3660 Query 138452 TGTCATCGTTGTACAGATTCAACTT-GATCAAGTCGTTTATCAGATATCTGTTTATGACC 138510 ||||||| || ||| |||| | || | ||||||| || | || || | || | ||| Sbjct 3661 TGTCATCATTCCACA-ATTCCAGTTCGGTCAAGTCTTTCAGCAAATGACGATTCACCACC 3719 Query 138511 TGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGAT 138570 || ||||| || | || ||||| || ||| |||||| ||| |||||||||||||| Sbjct 3720 TGGAATTCCCCTGATAAAACTCGTCGGTTGTAGATGTTGGACGTGTAAGGCTCAAACGAT 3779 Query 138571 TCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAA 138630 ||||||||||| || || ||||| |||| ||||| ||||| |||| || |||||| Sbjct 3780 TCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATTGGGGCCAACAGAAGAGAG 3839 Query 138631 TTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATC 138686 || | | |||||| |||| || || ||| | ||||| ||||||||| Sbjct 3840 TTTCTCACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCCCAGTTCCACAAATC 3895 Score = 156 bits (172), Expect = 4e-33 Identities = 296/428 (69%), Gaps = 6/428 (1%) Strand=Plus/Minus Query 138150 AGATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACAT 138209 || ||| || || ||||| | || |||| | || || | | || | ||| ||||| Sbjct 563 AGCTTTGTCGACTGTAAATTGAATCGCATTCACTGCAGGCCTTATCCTTAAATAGTACAT 504 Query 138210 TCCCGTTTTTAA-CCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAG 138268 |||||| || | |||| ||||| | | || | ||| |||||||| || ||||| Sbjct 503 TCCCGTCTTCAGTCCCAGTTTCCAAC-CATAGAAGTGAATCGAAGTTAGCTTTCCGTAAT 445 Query 138269 TCGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAA 138328 ||||| || | |||||||| || || || ||||| || || || ||||||||| Sbjct 444 TCGGTGCAGCGACGTGAATGTTAAAAGACTGGCTTTGATCAATAAAGGCTCCTCGATCAG 385 Query 138329 TGGCCATGTTAATTAAA-TTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGA 138387 |||||||| || | ||||||| | || |||||||| || || || ||| | ||| Sbjct 384 CAGCCATGTTGATGGTAGTTTTTACACTA-ATTTCCCACACAGTTTTATAAAGAGCTCGA 326 Query 138388 ATATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTT 138447 || | | || ||| | |||||||||||| || ||| |||||||| || Sbjct 325 ATGTCTTCAGGAATTTCCTCTATATTTTGAATGGATCCATTGTGTGCAATGATTTTGTTC 266 Query 138448 CTCATGTCATCGTTGTACAGATTCAACTT-GATCAAGTCGTTTATCAGATATCTGTTTAT 138506 |||||||||| || ||| |||| | || | ||||||| || | || || | || | Sbjct 265 TTCATGTCATCATTCCACA-ATTCCAGTTCGGTCAAGTCTTTCAGCAAATGACGATTCAC 207 Query 138507 GACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAA 138566 || |||||||| || | ||| ||||||||| ||| ||||| ||| |||||||||| Sbjct 206 CACTTGAAATTCTCCAGACAAAACTCGACGATTGTAGATGTTCGACGTGTAAGGCTCAAA 147 Query 138567 CGATTCGT 138574 |||||||| Sbjct 146 CGATTCGT 139 >seq25828 Length=6072 Score = 197 bits (218), Expect = 1e-45 Identities = 368/531 (69%), Gaps = 16/531 (3%) Strand=Plus/Minus Query 138194 TTCTCAGATAATACATTCCCGTTTTTA-ACCCATTTTCCCAGGCGTACATGTGTATCGAA 138252 ||||||||| ||||||| || || | ||| | ||||| || |||| | ||| || ||| Sbjct 751 TTCTCAGATTGAACATTCCGGTCTTAAGACCGAGTTTCCAAG-CGTAGAAGTGGATTGAA 693 Query 138253 GTGAGTAACGCGTAAGTCGGTTTCGCCAGAAAT---ATGTTAAACGATTGACTCTGATCG 138309 || | | | || ||||| |||| || |||||||| | ||||| ||||| Sbjct 692 GTTAATTTTCCATAGTTCGGT---GCCACAACGTGAATGTTAAAAGCCTGACTTTGATCA 636 Query 138310 ATGAAAGCGCCTCGATCAATGGCCATGTTAATTAAATT---TTTACTTTTCATCTCCCAC 138366 || || || ||||||||| ||||| || ||| || ||||| | || ||||| Sbjct 635 ATAAAGGCACCTCGATCAGCAGCCATATTCATTG--TTGCCTTTACACTG-ATTTCCCAA 579 Query 138367 ACGGTCTTGTATAGATCACGAATATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCG 138426 || || ||||| || | || || | || ||| | |||||||||||| || Sbjct 578 ACTGTTTTGTAAAGGGCTCGGATTTCATCTGGAATTTCTAGTATATTTTGAATGGATCCA 519 Query 138427 TTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTT-GATCAAGTC 138485 ||| |||||||| || |||||||||| || ||| |||| | || | | ||||| Sbjct 518 TTGTGTGCAATGATTTTGTTCTTCATGTCATCATTCCACA-ATTCCAGTTCGGTTAAGTC 460 Query 138486 GTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAAT 138545 || | || || | || | ||||| ||||| || | ||| ||||||||| ||| || Sbjct 459 TTTCAGCAAATGACGATTCACCACCTGGAATTCTCCAGACAAAACTCGACGATTGTAGAT 400 Query 138546 GTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGT 138605 ||| ||| ||||||||||||||||||||||||| || || ||||| |||| ||||| Sbjct 399 GTTCGACGTGTAAGGCTCAAACGATTCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGT 340 Query 138606 CGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAG 138665 ||||| |||| || |||||| || | | |||||| |||| || || || Sbjct 339 TGGCATTGGGGCCAACAGAAGAGAGTTTCTCACACCGTGTTTTGCGATTTTCTCTTTCAG 280 Query 138666 CGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716 | | ||||| ||||||||| | || ||||||||||||| |||||||| Sbjct 279 CTCAGCCCAGTTCCACAAATCTGTTGGCGTTTTGTTCCACATGTCGTACTG 229 Score = 158 bits (174), Expect = 1e-33 Identities = 306/453 (68%), Gaps = 9/453 (2%) Strand=Plus/Minus Query 138786 GCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGC 138845 |||||| || || || || || |||||||||||| |||||| || || | || | || Sbjct 5973 GCTCGCTTCCAGGGCCCCGTAATAAATAGTTTCGAAAATCTGTTGGTTCAATAACTGCGC 5914 Query 138846 CTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCC 138905 ||| ||||| ||||| ||||| | | || |||| ||||| |||| || || || || Sbjct 5913 CTCTGCGCTTTCGTAGGGCATTCTCATCAGGATGAAGGCGTCTGCCAAGCCCTGGACACC 5854 Query 138906 CACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTT 138965 | ||||| || ||||| | || ||| || | ||| || || | |||||||| || Sbjct 5853 AATTCCGATCGGACGATGTCTCATATTCGATGTTTTCGCCTCTGGTACGGGATAATAATT 5794 Query 138966 TACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTC 139025 | ||| || | || |||| ||| | ||| || ||| | ||| ||| | Sbjct 5793 GATATCAATCACCTTATTTAGATTCCTTGTCACCGTTTTGGTCACTTCCTTCAATTTCTT 5734 Query 139026 AAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGA 139085 ||||||||| || | || | |||| ||||| |||| | ||||| Sbjct 5733 AAAATCGTAC---------TTCTTCTCAGCTACGTTCACAAACATGTTCAGGGCGATCGA 5683 Query 139086 GGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAA 139145 || | ||| || || ||||| || || | ||||||||| ||||| || | |||| Sbjct 5682 TGCCAGGTTACAGACAGCCACCTCATCTTTGGAGCTGTATTCCACAATCTCTGTGCACAG 5623 Query 139146 ATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTT 139205 |||||| || || || || | ||| || |||||||| |||| ||||| ||||| || Sbjct 5622 ATTACTGCATCGAATAGTGCCGATATTCTGCTGATTGCTCTTTCTATTACAGGCATCCTT 5563 Query 139206 GTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 ||||||||||| || | ||||| |||||||| Sbjct 5562 ATAAAGCATATAAGGCATTCCAGTCTCCACTTG 5530 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 138553 GTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATG 138612 ||| ||||||||||||||||||||||||| || || ||||| |||| ||||| ||||| Sbjct 224 GTGTAAGGCTCAAACGATTCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATT 165 Query 138613 TACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGAC 138672 |||| || |||||| || | | |||||| |||| || || ||| | | Sbjct 164 GGGGCCAACAGAAGAGAGTTTCTCACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCC 105 Query 138673 CAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTT 138732 |||| ||||||||| | || ||||||||||||| |||||||| | || ||| |||| Sbjct 104 CAGTTCCACAAATCTGTTGGCGTTTTGTTCCACATGTCGTACTGCAGAATACCCTTACTT 45 Query 138733 GCGGGACTGCCTTCGTACGAATCGTA 138758 | |||| |||| ||| | ||||| Sbjct 44 ACCGGACATCCTTGGTAAGTCTCGTA 19 >seq22640 Length=7414 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || ||||| || |||||||| || ||||| || || || | Sbjct 1460 ATGCAGATCTTCGTGAAGACCCTAACGGGGAAAACTATCACCCTCGAGGTGGAGCCCTCT 1401 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || ||||| || || || || Sbjct 1400 GACACGATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 1341 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||| || ||||| || |||||||||||| | | | |||| || || ||| Sbjct 1340 CAGCGATTGATTTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAAC 1281 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || || ||||| || || || ||||||||| | ||| | ||||| || || Sbjct 1280 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGACTCCGCGGTGGTGG 1231 >seq19288 Length=6598 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | ||||| || || || || || || || || || | Sbjct 4476 GATGCAGATCTTCGTCAAGACATTGACCGGCAAGACCATCACCCTTGAGGTCGAGCCCTC 4417 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || ||||| || || ||||| Sbjct 4416 CGACACTATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCA 4357 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || |||||||| || || || || ||||||||||| ||| | |||| || || || Sbjct 4356 GCAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGACGGCCGAACCCTGTCCGACTACAA 4297 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||||||||| | || || | ||||| Sbjct 4296 CATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGTCTGAGGGGAGG 4249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449656421144080