Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1166 114 2e-19 seq901 102 1e-15 seq25027 87.8 3e-11 >seq1166 Length=27534 Score = 114 bits (126), Expect = 2e-19 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || ||||| || ||||||||||| |||||||| | ||| | |||||||||| Sbjct 23025 GAGAAGCGGACGGACGACATTTCCTCGTGGGACGCCGACTTCCTCAAGGTCGACCAGGGA 22966 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 || | |||||| | || | ||||| || ||||||||||||||| || | ||| || Sbjct 22965 ACTTTGTTTGAGCTCATTTTGGCCGCGAATTACCTCGACATCAAGGGGCTTTTGGATGTG 22906 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 ||||| || ||||||||| | ||||| || ||| | || || || ||| | ||||| Sbjct 22905 ACCTGCAAAACTGTGGCCAACATGATCAAAGGAAAGACTCCGGATGAGATCAGGAAGACG 22846 Query 2035746 TTTAACATCAAGTACG 2035761 || ||||||||| ||| Sbjct 22845 TTCAACATCAAGAACG 22830 >seq901 Length=16702 Score = 102 bits (112), Expect = 1e-15 Identities = 168/241 (70%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| || || |||||| ||| |||||| || ||| ||| Sbjct 13823 TGTACTTGGTGACAGCCTTGGTTCCTTCACTGACGGCATGCTTGGCCAACTC-CCGGGCA 13881 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || |||||||||||||| || | || |||||| |||||||| | Sbjct 13882 ACAGAAGTCGGACGGCGGTCTGGATTTCCTGACTGATGATCGTAGATCGCTTGTTGTAGT 13941 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| ||||||| | || || || | | ||||| ||||| ||||| Sbjct 13942 GAGCCAAACGGGAAGCCTCGGCAGCAATTCGCTCAAAGGTATCGTTCACAAAACTGTTCA 14001 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| || ||| || ||||| || ||||||| | |||||||| Sbjct 14002 TGATGCTCATGGCCTTGCTGCTGATTCCAGTATCGGGATGGGCCTGCTTCAACACCTTGT 14061 Query 1485710 A 1485710 | Sbjct 14062 A 14062 >seq25027 Length=9736 Score = 87.8 bits (96), Expect = 3e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||| || || ||||| |||||||||||||| |||||||| | ||| || || | Sbjct 6269 CTCGAAGAAATTCGTCTTCCCCTCGAGCGAGATAAACTCCATGAAATTGAAAGGATTTGG 6210 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 ||| |||| |||||| || ||| | | || || ||||| ||||| |||||||| Sbjct 6209 CGTGTTGTAGATTTTCTCGACTCCCAGCTCCACTAGAAGACGGTCCGCGACAAATTCAAT 6150 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGAT 794077 ||| | |||| || | |||||||||||| Sbjct 6149 GTAAAAGGACATCAGTTTGCAGTTCATGCCGAT 6117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7911684420576954