Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq22640 136 4e-27 seq19288 129 6e-25 seq25828 118 1e-21 seq36370 91.5 1e-13 >seq22640 Length=7414 Score = 136 bits (150), Expect = 4e-27 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| ||| || ||| | | | ||||| || Sbjct 1255 AAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCCAG 1313 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| |||| | ||||||||||| || || || || |||||||| ||| Sbjct 1314 CTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGAT 1373 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | |||||| | ||||||||| |||| ||||| ||||| || Sbjct 1374 CTTGGCCTTGACATTCTCGATCGTGTCAGAGGGCTCCACCTCGAGGGTGATAGTTTTCCC 1433 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| |||||||| Sbjct 1434 CGTTAGGGTCTTCACGAAGATCTGCAT 1460 >seq19288 Length=6598 Score = 129 bits (142), Expect = 6e-25 Identities = 149/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| ||| || || || || ||||| |||||||||| Sbjct 4279 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCG--TCCTCCAGCTGCTTGC 4336 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | |||||||| || || || || || |||||||| |||||| || Sbjct 4337 CAGCGAAAATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCT 4396 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||||| |||||| || || | ||||| ||| |||||||||| | Sbjct 4397 TCACATTCTCGATAGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCGGTCAATG 4456 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 4457 TCTTGACGAAGATCTGCAT 4475 >seq25828 Length=6072 Score = 118 bits (130), Expect = 1e-21 Identities = 304/456 (67%), Gaps = 18/456 (4%) Strand=Plus/Minus Query 148538 TTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAG 148597 ||| |||||||| || || || ||||| ||||| || ||| ||| || ||| | | Sbjct 5979 TTCACAGCTCGCTTCCAGGGCCCCGTAATAAATAGTTTCGAAAATCTGTTGGTTCAATAA 5920 Query 148598 CGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTG 148657 | |||| |||||||||| ||||| | || | | | || ||||| || | |||||| Sbjct 5919 CTGCGCCTCTGCGCTTTCGTAGGGCATTCTCATCAGGATGAAGGCGTCTGCCAAGCCCTG 5860 Query 148658 TACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGG-AT 148716 || || | || || || || ||| | || || || ||| |||| | ||| || Sbjct 5859 GACACCAATTCCGATCGGACGATGTCTCATATTCGATGTTTTCGC-CTCTGGTACGGGAT 5801 Query 148717 AGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCA 148776 | | ||| || || | ||| | ||||| | |||| || || | || | | Sbjct 5800 AATAATTGATATCAATCACCTTATTTAGATTCCTTGTCACCGTTTTGGTCA--CTTC-CT 5744 Query 148777 GCAATTC---AAAATCGTACTTGT---CATCTACGATG-----CATCGGTTCACGGCGAT 148825 ||||| |||||||||||| | || ||||| | ||| ||||| |||||| Sbjct 5743 TCAATTTCTTAAAATCGTACTTCTTCTCAGCTACGTTCACAAACAT--GTTCAGGGCGAT 5686 Query 148826 AGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCA 148885 || || || || || || ||| |||||| || |||||| || || ||||| | ||| Sbjct 5685 CGATGCCAGGTTACAGACAGCCACCTCATCTTTGGAGCTGTATTCCACAATCTCTGTGCA 5626 Query 148886 CAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTC 148945 |||||| |||||| || ||| | |||| ||||||||||| || || || || || Sbjct 5625 CAGATTACTGCATCGAATAGTGCCGATATTCTGCTGATTGCTCTTTCTATTACAGGCATC 5566 Query 148946 CTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 ||| || ||||| || || ||||| ||||| || Sbjct 5565 CTTATAAAGCATATAAGGCATTCCAGTCTCCACTTG 5530 >seq36370 Length=18529 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873 ||| | |||||| || ||| || | || || ||| ||||||| || ||||||| || Sbjct 18482 GTTTAGGGCGATCGATGCTTGACTACAAACAGCCACCTCATCCTTGGAACTGTACTGCAC 18423 Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933 ||||||| || ||||| ||||| || || | ||||| |||||||||||| | Sbjct 18422 AATCTCGGAGCTTAGATTACTGCACCGAATAGTACCGATGTTCTGTTGATTGCTCTTCCG 18363 Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT 148993 |||||| ||| ||||| ||||| | || ||||||||||| || |||| || || Sbjct 18362 GTTGCAAATGTCTTTGTATAGCATAAATGGCATTCCAGTTTCCACTTGACTTTCTACGAT 18303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483161650194640