Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq25828 102 2e-16 seq5269 93.3 1e-13 >seq25828 Length=6072 Score = 102 bits (112), Expect = 2e-16 Identities = 278/420 (66%), Gaps = 7/420 (2%) Strand=Plus/Plus Query 110681 TGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG 110740 ||| ||||| |||||||| | | | | || ||| || ||||||| ||||||| || Sbjct 5151 TGGCCTTGTACCAATGTTGAAATTATATAATAACATGGCCCGATATGTGGATCAAGGCGG 5210 Query 110741 TAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGA 110797 || | || || | | || || ||| | || || |||||| | || |||||||| Sbjct 5211 AAACAAAAGACCCGGGGCCTGGGCCATTTATTTAGAGCCGTGGCATGCCGACATATTTGA 5270 Query 110798 ATTCTTAGAACTTCGTAAA-AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTT 110856 ||||| ||| || || ||| |||| ||| || || |||| | |||||||||| Sbjct 5271 TTTCTT-GAATTTAAAGAAGAATACAGGAGAGGAAAAAGAACGAGCTAGAGATTTATTTT 5329 Query 110857 ATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTC 110916 | || | |||||| |||| || |||||||| | || |||| |||||| |||| Sbjct 5330 ACGCTCTTTGGATTCCAGACTTGTTCATGAAGAGGGTGGAAGAGAATGGCGAATGGTGCT 5389 Query 110917 TTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACC 110976 | ||||||||| | ||| ||||| | | |||| | ||| | || ||||| | Sbjct 5390 TGATGTGTCCTGACGATTCCCCTGGATTGTTTGATTGTTGGGGAGATGAATTTGATAAAT 5449 Query 110977 TTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTC-CAGCTCAAGAACTT 111035 | || || ||||| |||||| || | | | ||| || || ||| || || ||| Sbjct 5450 TGTATATGAAGTATGAGTCAGAAGGGAAATAT-GTAAAAAAGGTCAAAGCACAGGATCTT 5508 Query 111036 TGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT 111095 ||| | || | | ||||| || ||||||| |||||||| | ||||| ||| Sbjct 5509 TGGATGGCTATTATCACAAGTCAAGTGGAGACTGGAATGCCTTATATGCTTTATAAGGAT 5568 >seq5269 Length=17594 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||| | || | |||| ||| | || ||| | || ||| | || || || ||| Sbjct 12145 AGACATTTAAGAGATGACGATTTGGTGATCTTTAATCGTCAGCCAACTCTTCACAAGATG 12204 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAG- 305424 |||||||| |||| || ||||| ||| | | | || |||||| | ||| |||| Sbjct 12205 AGTATGATGGGGCATAGGGTGAAAGTTTTACCCTGGTCCACTTTTCGAATGAATTTAAGC 12264 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 ||| | | |||||||| || |||||||| |||||||||||||| | || || ||||| Sbjct 12265 TGCACTT-CTCCTTATAACGCCGATTTTGACGGAGATGAAATGAACTTACACGTTCCTCA 12323 Query 305485 ATCAAAGG 305492 |||| || Sbjct 12324 GTCAATGG 12331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186160673811446