Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq5897 102 3e-18 seq28955 100 9e-18 seq21352 95.1 4e-16 seq3470 95.1 4e-16 >seq5897 Length=92653 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 7140 TATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTC 7199 Query 2825 AACCCCGGGCTTCAGC 2840 || |||||| ||| || Sbjct 7200 AATCCCGGGTTTCGGC 7215 >seq28955 Length=15491 Score = 100 bits (110), Expect = 9e-18 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 8638 ATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCA 8697 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 8698 ATCCCGGGTTTCGGC 8712 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 6811 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 6870 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 6871 CCGGGTTTCGGC 6882 >seq21352 Length=4572 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2442 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2383 Query 2829 CCGGGCTTCAGC 2840 || || ||| || Sbjct 2382 CCTGGTTTCGGC 2371 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3251 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3310 Query 2829 CCGGGCTTCAGC 2840 || || ||| || Sbjct 3311 CCTGGTTTCGGC 3322 >seq3470 Length=7173 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 6305 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 6364 Query 2829 CCGGGCTTCAGC 2840 || || ||| || Sbjct 6365 CCTGGTTTCGGC 6376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15842165497470