Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq25027 105 6e-18 >seq25027 Length=9736 Score = 105 bits (116), Expect = 6e-18 Identities = 314/476 (66%), Gaps = 20/476 (4%) Strand=Plus/Minus Query 110022 CTCCGAACCGCTTGTATTCGCCTACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAG 110081 |||||||| | |||||| || || || ||||| ||||| || || |||||||| | Sbjct 6300 CTCCGAACTTTTGGTATTCACCGACCTTCTTCTCGAAGAAATTCGTCTTCCCCTCGAGCG 6241 Query 110082 ATATATTATTCATAAACTCGAAAGGATTGACAGTGTTAAAGTGTTTGTCGTAGCCCAATT 110141 | ||| | ||| || | ||||||||| ||||| || ||| ||| |||| | Sbjct 6240 AGATAAACTCCATGAAATTGAAAGGATTTGGCGTGTTGTAGATTTTCTCGACTCCCAGCT 6181 Query 110142 CGAATAGCAATCGATCCGCCACAAATTCAATATACTCGCACAT-GGACTGTACGTTCATG 110200 | | ||| | || ||||| ||||||||||| || | |||| | || | ||||||| Sbjct 6180 CCACTAGAAGACGGTCCGCGACAAATTCAATGTAAAAGGACATCAGTTTGCA-GTTCATG 6122 Query 110201 CCTAACATGGCAACTGGTAGAGCGGTAGTaaaaaaaTCCTTTTCAATGTCGACAGCCTCT 110260 || | |||| | ||||| |||||| || || || |||| ||||||| | || || || Sbjct 6121 CCGATCATGTCTACTGGAAGAGCGTCTGTCAAGAATTCCTGTTCAATGACCACGGCTTC- 6063 Query 110261 ACGAACATACTCAACACCTGGCTCTTATGAAGCTTGTTCTTTTCGGGAATATATCTATTA 110320 ||| | |||| | | | || | |||| ||| | | | | | || Sbjct 6062 ACGGATGATTTCAATAATTCGTTCCT-------TTGTCGGCTTCTGCACCAAGTGT-TTG 6011 Query 110321 TAGTAGAGGCAGGCAAAATCAGTGTGTAATCCTTCATCTCTAGAAATGAGTTCGTTGCTG 110380 | |||||| || |||||| ||| | |||||| |||| ||||| ||||| ||| | Sbjct 6010 AACATGAGGCAAGCGAAATCACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCATTGGAG 5951 Query 110381 TATGTCAAACCGGGTA-GAGCCCCTTTTTTGTGTCTTTTATGTAGTAGATTGCGGCAAAA 110439 | |||||||| || | || || | || || |||| | |||| | |||||| Sbjct 5950 AAGGTCAAACCAGGCATTAGACC-----TCGTTTC-TTTAGCCAAAAGATAGAGGCAAAG 5897 Query 110440 CTTC--CGGAAAAATACTCCTTCGACGATTGCAAAAGCGACCATGCGCTCGGCAAA 110493 |||| | |||||| | ||||| || ||||||||| | || || || |||| Sbjct 5896 CTTCCACTGAAAAAGATGCCTTCCACAGCTGCAAAAGCAATCACACGTTCTCCAAA 5841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444855796019520