Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq25027 158 2e-32 >seq25027 Length=9736 Score = 158 bits (174), Expect = 2e-32 Identities = 342/502 (68%), Gaps = 11/502 (2%) Strand=Plus/Plus Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||| | ||| |||||||| ||||| ||||| ||||| | || ||||| ||| | Sbjct 5448 ATTTGGGACTTTTAC-AAAAAGGCTGAGGCTTCCTTCTGGACTGTGGAAGAGGTGGACTT 5506 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTG-AGCGACGACGAGCGCCATTTCATCAAGC 1455894 |||| || | | |||| | | || ||| | | ||| | |||||||| | Sbjct 5507 GTCTAAAGACATGGCCGATTGGGAGAAGATGCAGCCATGT-GAGAGGCATTTCATTTCCC 5565 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 | || || ||||||||| || ||||| || || || ||| |||||| ||| | || Sbjct 5566 ATGTGCTTGCCTTTTTT-GCAGCCAGTGACGGAATTGTGAATGAGAACTTGGTGGAACGG 5624 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || | | ||||| || | | ||||| || || || |||||||| |||||||| || Sbjct 5625 TTCAGTCAGGAGGTGCAGGTCACCGAGGCTCGGTTCTTCTACGGGTTTCAGATCGCTATG 5684 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || || | |||||||||| ||| | ||||| | || ||| | ||||| | || Sbjct 5685 GAGAATGTACACTCTGAAATGTACAGCATTCTGATTAATACGTACATTCAGGACACAGTG 5744 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 |||| || || || |||||| || ||| |||| | |||| ||| ||||| ||| Sbjct 5745 GAGAGAGAGTTTCTGTTCAACGCCATTGAAACGCTGCCCTGTGTGAAGAAGAAGGCAGAC 5804 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192 ||||| |||| |||||| || || ||| || |||||| || || | | | Sbjct 5805 TGGGCCTTGAATTGGATCGCCAGTGATAAGGC---GA-ACTTTGGAGAACGTGTGATTGC 5860 Query 1456193 CTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 ||||| || || || |||||||||||| || || || | | ||||||||||| || Sbjct 5861 TTTTGCAGCTGTGGAAGGCATCTTTTTCAGTGGAAGCTTTGCCTCTATCTTTTGGCTAAA 5920 Query 1456252 GAAGCGCGGCCTCATGCCCGGT 1456273 ||| || || || ||||| ||| Sbjct 5921 GAAACGAGGTCTAATGCCTGGT 5942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7173674766475532