Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq35853 145 8e-30 seq19288 123 3e-23 seq22640 114 1e-20 seq25828 105 7e-18 seq11803 102 8e-17 >seq35853 Length=3953 Score = 145 bits (160), Expect = 8e-30 Identities = 352/529 (67%), Gaps = 8/529 (2%) Strand=Plus/Minus Query 8793 TTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCT 8852 ||||||||| ||| || ||||| ||||| || || |||| || | || || || Sbjct 3893 TTTGTGGAACTGGGCTGAGCTGAAAGAGAAAATCGCAAAACACGGTGTGAGAAACTCTCT 3834 Query 8853 GTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTT 8912 || |||| ||||| ||||| | || |||||||| | |||||||||||||| || Sbjct 3833 TCTGTTGGCCCCAATGCCAACCGCTTCCACAGCTCAAATCCTCGGAAACAACGAATCGTT 3774 Query 8913 TGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTTTTTAATGCT 8972 |||||| | ||| |||| | ||| ||||||| || | || || || || | Sbjct 3773 TGAGCCTTACACGTCCAACATCTACAACCGACGAGTTTTATCAGGGGAATTCCAGGTGGT 3714 Query 8973 GAATCGTCATTTGATGCGCGACTTGATCGAAGCGGGCGTTT---ACGACGACAAAATGCG 9029 ||||||||||||| || ||||||| |||| || | | | || |||| | | Sbjct 3713 GAATCGTCATTTGCTGAAAGACTTGACCGAACTGGAATTGTGGAATGATGACATGAAGAA 3654 Query 9030 CGATGCCATCGTGGAAGCCAACGGCAGCGTTCAGAACATTGACGCGGTGCCTCAACACAT 9089 | | ||| | | | ||| || | |||| || || || | | ||| || |||| Sbjct 3653 CAA---AATCATTGCACACAATGGATCCATTCAAAATATAGAGGAAATTCCTGAAGACAT 3597 Query 9090 TAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGCAAAGCACGCTGATCGGCATGGCTGC 9149 | || || |||||||| || |||||||| | || || ||| ||||||||| Sbjct 3596 TCGAGCTCTTTATAAAACTGTGTGGGAAATTAGTGTAAAAACTACAATCAACATGGCTGC 3537 Query 9150 GGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTAGCCGCACCAAC 9209 ||| |||| || ||||||||||| || || ||||||||| | ||| || ||||| | Sbjct 3536 TGATCGAGGAGCCTTTATTGATCAAAGCCAGTCTTTTAACATTCACGTCGCTGCACCGAA 3477 Query 9210 TTACGCTTTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGCAT 9269 ||||| | | | ||||| | | |||||| |||| | || || || || Sbjct 3476 TTACGGAAAGCTAACTTCGATTCACTTCTATGGATGGAAACTGGGACTGAAGACGGGAAT 3417 Query 9270 GTACTATTTGCGCACAAAACCCGCCGCTGAAC-CTATCAAATTTACAGT 9317 ||| ||||| || || ||||| || | | ||| | || |||||||||| Sbjct 3416 GTATTATTTACGAACGAAACCTGCTG-TAAACGCAATTCAATTTACAGT 3369 >seq19288 Length=6598 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || || | ||| | ||| || ||||| ||||| || |||||||||||| Sbjct 4249 CCTCCCCTCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4308 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| || |||||||||||||||||||| || || Sbjct 4309 AGGGTTCGGCCGTCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGA 4368 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || || || || | |||||||| | || || Sbjct 4369 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATAGTGTCGGAGGGCTCGACC 4428 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || ||||| || || || ||||| || ||||| ||| Sbjct 4429 TCAAGGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATCTGCATCTTG 4479 >seq22640 Length=7414 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | |||||| | ||| | ||| || ||||| ||||| || |||||||||||| Sbjct 1234 CCACCGCGGAGTCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1293 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || || |||||||| |||||||| || || || Sbjct 1294 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGA 1353 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| || | ||||| || | ||||| Sbjct 1354 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCAGAGGGCTCCACC 1413 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || || ||||| || |||| || || ||||| || |||||| Sbjct 1414 TCGAGGGTGATAGTTTTCCCCGTTAGGGTCTTCACGAAGATCTGCATT 1461 >seq25828 Length=6072 Score = 105 bits (116), Expect = 7e-18 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 8761 CAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGC 8820 || |||||||||||||| ||||| || ||||||||| ||| || ||||| Sbjct 229 CAGTACGACATGTGGAACAAAACGCCAACAGATTTGTGGAACTGGGCTGAGCTGAAAGAG 288 Query 8821 AAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACG 8880 ||||| || || |||| || | || || || || |||| ||||| ||||| | Sbjct 289 AAAATCGCAAAACACGGTGTGAGAAACTCTCTTCTGTTGGCCCCAATGCCAACCGCTTCC 348 Query 8881 ACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTG 8940 || |||||||| | |||||||||||||| |||||||| | ||| ||| | ||| Sbjct 349 ACAGCTCAAATCCTCGGAAACAACGAATCGTTTGAGCCTTACACGTCGAACATCTACAAT 408 Query 8941 AGACGAGTGTTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATC 9000 | ||||| ||| | || || || || |||||||||||||| || ||||| | | Sbjct 409 CGTCGAGTTTTGTCTGGAGAATTCCAGGTGGTGAATCGTCATTTGCTGAAAGACTTAACC 468 Query 9001 GAA 9003 ||| Sbjct 469 GAA 471 Score = 93.3 bits (102), Expect = 4e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 8759 TGCAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAAC 8818 |||| |||||||||||||| ||||| || ||||||||| ||| || ||||| Sbjct 59 TGCAGTACGACATGTGGAACAAAACGCCAACAGATTTGTGGAACTGGGCTGAGCTGAAAG 118 Query 8819 GCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCA 8878 ||||| || || |||| || | || || || || |||| ||||| ||||| Sbjct 119 AGAAAATCGCAAAACACGGTGTGAGAAACTCTCTTCTGTTGGCCCCAATGCCAACCGCTT 178 Query 8879 CGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCAC 8924 | || |||||||| | |||||||||||||| |||||||| | ||| Sbjct 179 CCACAGCTCAAATCCTCGGAAACAACGAATCGTTTGAGCCTTACAC 224 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 7525 TACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTG 7584 || || ||||| ||||| ||| | |||||| || || |||||| || || | ||| Sbjct 4494 TATTTATTGAAGATCAAAGGCAAGGTAGCGGAAAGACCACAGCACATGTTGATGAGGGTG 4553 Query 7585 GCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCT 7644 || || || ||||||||||| |||||||| ||||| | ||||| ||| ||| | | Sbjct 4554 GCTGTTGGTATTCACGGCGAGGACATTGATGCCGCTATAGAAACCTAC--AATCTCCTTT 4611 Query 7645 TTGAA--ACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTC 7702 |||| | || || || || || || |||||||| || || | ||| | ||| | Sbjct 4612 CTGAACGTTATTTCACACATGCCTCTCCGACCATGTTCGCTGCTGCCACTCCCAGGCCCC 4671 Query 7703 AATTGTCCTCGTGTTTTTTGCTAACCATG 7731 | || ||||| || || ||| | |||||| Sbjct 4672 AGTTATCCTCATGCTTCTTGTTGACCATG 4700 >seq11803 Length=6467 Score = 102 bits (112), Expect = 8e-17 Identities = 191/277 (69%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 7471 CACGAGCGCGATTACGATTACCGTTATTTTGCCGTAAAAACTTTAAAA--AACGGCTACT 7528 ||||| || |||| || ||| ||| |||| | ||||| || || | || || | Sbjct 5196 CACGATCGTGATTTTGAATACAATTACTTTGGATTTAAAACATTGGAACGATCG--TATT 5253 Query 7529 TGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGG 7588 | ||||| ||||| ||| | |||||| || ||||||||| || || | ||||| | Sbjct 5254 TATTGAAGATCAAAGGCAAGGTGGCGGAAAGACCACAACACATGTTGATGAGGGTGGCTG 5313 Query 7589 TGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGA 7648 | || ||||||||||| |||||||| ||||| | ||||| ||| ||| | | ||| Sbjct 5314 TTGGTATTCACGGCGAGGACATTGATGCCGCTATAGAAACCTAC--AATCTCCTTTCTGA 5371 Query 7649 A--ACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATT 7706 | | || || || || || || |||||||| || || | ||| | |||||| || Sbjct 5372 ACGTTATTTCACACATGCCTCTCCGACCATGTTCGCTGCTGCCACTCCCAGGCCTCAGTT 5431 Query 7707 GTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || || || || ||| | |||||| ||||| ||| Sbjct 5432 ATCATCATGCTTCTTGTTGACCATGAAAGAAGATAGC 5468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505127468552720