Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq42127 109 8e-19 >seq42127 Length=1170 Score = 109 bits (120), Expect = 8e-19 Identities = 230/342 (67%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 161353 AGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAA 161412 ||| || || || | || | ||| || ||||||||||| || || |||| || || Sbjct 913 AGAAACGCCCCAAACTGAGAAAACGCCGTTCTACCCACGGTCGCCCTATGCTTGTGCCAA 854 Query 161413 ACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAG 161472 | | || || | ||||| ||| |||||||||||| || ||| |||| ||| Sbjct 853 AATGTACGGGTTCTGGATCGTAGTCAACTACAGAGAGGCCTACAATATGTTCGCCTGTAA 794 Query 161473 TGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGAT 161532 ||||||||| ||||| ||||| || || || | || |||| |||||| ||| | ||||| Sbjct 793 TGGTATTCTCTTCAATCATGAATCGCCGCGGAGAGGAGAGAATTTCGTGACCAGAAAGAT 734 Query 161533 TACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCT 161592 ||| ||| | | || | | | | || | | | | || ||| | Sbjct 733 TACCAGGTCCGTTGCAAAAATCTCTCTAAATCAAATCGAATCGTTCGAATTGGGCAATTT 674 Query 161593 AAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTT 161652 | |||| | ||||| ||||| ||||| ||||||| || ||||| |||||| ||||| | Sbjct 673 AGACTCTAAGCGAGACTGGGGCCATGCCAAAGACTACGTAGAGGCAATGTGGATGATGCT 614 Query 161653 ACAACAGGAAACT---CCTGATGACTATGTGATTGCCACAGG 161691 |||| || || ||| | |||| |||||||||||| || Sbjct 613 GCAAC---AACCTCAGCCTCAGGACTTTGTGATTGCCACCGG 575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729538302989680