Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq25027 192 5e-44 seq368 178 1e-39 >seq25027 Length=9736 Score = 192 bits (212), Expect = 5e-44 Identities = 405/595 (68%), Gaps = 17/595 (3%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 ||||| || | || |||||||| || | ||||| ||| | | |||||||| || || Sbjct 5415 AGGTTCGTGATATTCCCAATTCAGTACAAAGACATTTGGGACTTTTACAAAAAGGCTGAG 5474 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA 43816 || || || ||||| | ||||| || || ||| |||||||| | || ||||| Sbjct 5475 GCTTCCTTCTGGACTGTGGAAGAGGTGGACTTGTCTAAAGACATGGCCGATTGGGAGAAG 5534 Query 43817 TTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGAC 43876 | | ||| || | ||||| || || || | || |||||||| || || ||| Sbjct 5535 ATGCAGCCATGTGAGAGGCATTTCATTTCCCATGTGCTTGCCTTTTTTGCAGCCAGTGAC 5594 Query 43877 GGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCA 43936 || || || ||||| || ||||| ||||| || || || || | | || || Sbjct 5595 GGAATTGTGAATGAGAACTTGGTGGAACGGTTCAGTCAGGAGGTGCAGGTCACCGAGGCT 5654 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 || | || || |||||||| || || || || ||| | || || ||||||||||| || Sbjct 5655 CGGTTCTTCTACGGGTTTCAGATCGCTATGGAGAATGTACACTCTGAAATGTACAGCATT 5714 Query 43997 CTGATAGATACGTACATCAAAGA---TGGGCACGAGA-AGCATCGATTGTTTAATGCGAT 44052 ||||| |||||||||| | || | | | |||| || || |||| || || || Sbjct 5715 CTGATTAATACGTACATTCAGGACACAGTGGA-GAGAGAGTTTC---TGTTCAACGCCAT 5770 Query 44053 AGAAACAGT-ACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATT 44108 ||||| | |||| | | || | || |||||||||||| | || ||||| | | Sbjct 5771 TGAAACGCTGCCCTGTG-TGAAGAAGAAGGCAGACTGGGCCTTGAATTGGATCGCCAGTG 5829 Query 44109 CAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 || | ||||||||||| | | || ||||||| |||||||||||| | |||| Sbjct 5830 ATAAGGCGAACTTTGGAGAACGTGTGATTGCTTTTGCAGCTGTGGAAGGCATCT--TTTT 5887 Query 44169 CA--GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGAC 44226 || ||| ||||| | || |||||| |||||||||||||| | |||||||| ||||| Sbjct 5888 CAGTGGAAGCTTTGCCTCTATCTTTTGGCTAAAGAAACGAGGTCTAATGCCTGGTTTGAC 5947 Query 44227 GTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || || ||||| | || || || ||||| | || || ||||| |||||| Sbjct 5948 CTTCTCCAATGAACTGATTTCACGAGACGAAGGACTGCACTGTGATTTCGCTTGC 6002 >seq368 Length=53407 Score = 178 bits (196), Expect = 1e-39 Identities = 228/312 (73%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 ||| | || || ||| || ||||||||| |||| | | |||||| | || ||| Sbjct 46701 CGAAGAATTATTATGTCTGCCTGGAACCCACCGGATCTTCCGAAAATGGCACTTCCTCCT 46760 Query 41064 TGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCA 41122 || || | || || |||||||| || ||||| ||| | || |||||||||||||| Sbjct 46761 TGCCACT-GTCTGGTACAGTTTTATGTGGCAAATGGGGAATTATCTTGTCAATTGTATCA 46819 Query 41123 AAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCAC 41182 |||||| | ||| ||||| |||| || || ||||||||||| ||||||||||| ||||| Sbjct 46820 AAGATCTGCTGATATGGGCTTAGGAGTTCCTTTTAACATAGCCAGTTATGCTCTCCTCAC 46879 Query 41183 GTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGA 41242 |||||||| || ||||| |||||| | ||||| || || ||||| ||||| | ||||| Sbjct 46880 TTATATGATCGCCCACGTCACCAATCTCAAACCAGGAGACTTTGTCCACACTCTGGGAGA 46939 Query 41243 TGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAG 41302 || || | || ||| ||||| || || ||| ||| ||||| | | ||| || | Sbjct 46940 TGCCCACGTCTATTCTAACCACATTGAACCTCTAAAAGAGCAACTCAAAAGAACCCCCAA 46999 Query 41303 ACCATTTCCAAC 41314 | |||||| || Sbjct 47000 AGAATTTCCCAC 47011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397248260430430