Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq35853 118 9e-22 seq36370 91.5 1e-13 >seq35853 Length=3953 Score = 118 bits (130), Expect = 9e-22 Identities = 347/530 (65%), Gaps = 6/530 (1%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || ||||| || |||||||| || || || || || || || ||||||||||| || Sbjct 3363 TTATCGACTGTAAATTGAATTGCGTTTACAGCAGGTTTCGTTCGTAAATAATACATTCCC 3422 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTG--GTAATTGG 130523 || || ||||| | ||| |||||| ||| || | | | | || |||||| | Sbjct 3423 GTCTTCAGTCCCAGTTTCCATCCATAGAAGTGAATC--GAAGTTAGCTTTCCGTAATTCG 3480 Query 130524 GTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAG 130583 || || ||| ||||| | || || |||||||||||| || || | || |||| Sbjct 3481 GTGCAGCGACGTGAATGTTAAAAGACTGGCTTTGATCAATAAAGGCTCCTCGATCAGCAG 3540 Query 130584 CCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGT 130643 |||||| || | ||||| | || ||||| | || || || ||| | | ||||| Sbjct 3541 CCATGTTGATTGTAGTTTTTACACTAATTTCCCACACAGTTTTATAAAGAGCTCGAATGT 3600 Query 130644 GTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCA 130703 || || || | | || ||||| | || |||| || || |||| ||| || Sbjct 3601 CTTCAGGAATTTCCTCTATATTTTGAATGGATCCATTGTGTGCAATGATTTTGTTCTTCA 3660 Query 130704 TACTTTTATCGTACAATCCAAGCT-GTACAAGATCTTTTACCAAATGATTATTAATGATT 130762 | | || ||||| | || | | |||| ||||| | ||||||| ||| | | Sbjct 3661 TGTCATCATTCCACAATTCCAGTTCGGTCAAG-TCTTTCAGCAAATGACGATTCACCACC 3719 Query 130763 TGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGAT 130822 || || || || | | || |||| ||| |||||| |||| | || ||||| ||| Sbjct 3720 TGGAATTCCCCTGATAAAACTCGTCGGTTGTAGATGTTGGACGTGTAAGGCTCAAACGAT 3779 Query 130823 TCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAA 130882 |||||||| |||| ||||| ||||| | ||||| ||||| |||| | ||||| Sbjct 3780 TCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATTGGGGCCAACAGAAGAGAG 3839 Query 130883 TTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCA 130932 || | | |||||| | | |||||| |||| ||| |||| | ||| Sbjct 3840 TTTCTCACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCCCAGTTCCA 3889 >seq36370 Length=18529 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661 |||| | ||| ||| ||||| | |||| | || |||| ||| ||||||||||| || Sbjct 18035 GGGAGAGTCGTGGGGGCACATCAAACACCATTCTCCATTCTCTTCCACTCGCTTCATGAA 17976 Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCAT 131721 || ||| || | ||| || || || ||| |||| | ||| | | ||||| | || | Sbjct 17975 CAGATCTGGGATCCACAAAGCATAGCACAAATCTTTGGCTCTGTATTCTTCCTTTCCGGT 17916 Query 131722 AAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCA 131771 | |||| |||||||| | || || ||||||| || ||||| ||||||| Sbjct 17915 ATTTTTCTTCAAATTGAGGAAATCATAAATGTCGGCGTGCCAAGGTTCCA 17866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424712298209232