Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4345 96.9 4e-15 >seq4345 Length=10194 Score = 96.9 bits (106), Expect = 4e-15 Identities = 298/454 (66%), Gaps = 14/454 (3%) Strand=Plus/Minus Query 178883 AACCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 178942 ||||||| || ||||| || | || ||||| | |||||||||| |||| || || Sbjct 5806 AACCCGTTCCAATGCCCTCCGCGCCATTCACCAACACCATTGGAATAATTGGAATGTACC 5747 Query 178943 AGTCTGGTTCAATCGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTCG 179002 | | || |||||| | || || | |||||| | | | ||| |||||| | Sbjct 5746 ACTGCGGCTCAATCTTGTGGTTATCCTCGTACAAATACGTCAAAATGGGATCGTCCAGGG 5687 Query 179003 GATCAAAGATTTTACGAGCATCCCTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGACG 179062 ||| ||||| | | || | || || | ||||||||||| | | | || | Sbjct 5686 GATGGAAGATCATCCTGGCCAACTGCGTCAGCTGCGTGAAGATGTAACGAG---GCGAGG 5630 Query 179063 CA---TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGA 179119 || || ||||| || | | ||| || ||||| ||| | ||| || ||||||| Sbjct 5629 CAGAGTCCTTGCCTCCGTTCAAACGGGTTCCAAACGAACCGCTCGGCAGCAGCAGATTGA 5570 Query 179120 TATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTT 179179 | ||||| |||| | | | | ||||| |||| ||||| | ||||| | Sbjct 5569 TGTTGTTGCTGCCCACGAAATTCTGCGCCAAATTGATGATCGTCTGGCACAGGGACTGCT 5510 Query 179180 CACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGC-CAACTGCGCCACCTTCATC 179238 | ||||| ||||| | ||| ||| |||||| | |||| ||||||||||||||||||| Sbjct 5509 CCCCGTGGTGGTACTCGGACGTGTGCGCCACCAAA-CCGCTCAACTGCGCCACCTTCATC 5451 Query 179239 TCATCCTT---GAGGTTC-TTGTGG--AAGCACGCATACATCACCTTTCTTTGTGAAGGC 179292 || | ||| || ||| |||| | ||||||| ||||| | |||||| || ||| Sbjct 5450 TCGTTCTTCTCCAGCTTCTTTGTCGCAAAGCACGTGTACATGATCTTTCTCTGGCCCGGC 5391 Query 179293 TTGAGGCCGTCGGCCATGTGCGCGATGGAACGCT 179326 || | ||||| | ||| || ||||| |||| Sbjct 5390 TTAAATCCGTCCACAATGCACGGAATGGATCGCT 5357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618103672350160