Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq25828 138 1e-27 seq4345 96.9 4e-15 >seq25828 Length=6072 Score = 138 bits (152), Expect = 1e-27 Identities = 381/575 (66%), Gaps = 18/575 (3%) Strand=Plus/Plus Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 ||| | || | |||||| ||||||||||| | ||||||||||| || || |||| |||| Sbjct 5320 GATTTATTTTACGCTCTTTGGATTCCAGACTTGTTCATGAAGAGGGTGGAAGAGAATGGC 5379 Query 104759 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAG 104818 | |||| | | ||||| ||| | | ||||| | | ||| ||| || || Sbjct 5380 GAATGGTGCTTGATGTGTCCTGACGATTCCCCTGGATTGTTTGATTGTTGGGGAGATGAA 5439 Query 104819 TTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC---GGTGCCA 104875 ||||| | || | ||||| ||| |||||| | || | ||| | Sbjct 5440 TTTGATAAATTGTATATGAAGTATGAGTCAGAAGG---GAAATATGTAAAAAAGGTCAAA 5496 Query 104876 GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATG 104935 || ||| | |||| |||||| ||| |||| |||||||| | || || ||| Sbjct 5497 GCACAGGATCTTTGGATGGCTATTATCACAAGTCAAGTGGAGACTGGAATGCCTTATATG 5556 Query 104936 CTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC--AAG- 104992 ||||| || || |||||||| |||||| ||||| ||||| | || || | | Sbjct 5557 CTTTATAAGGATGCCTGTAATAGAAAGAGCAATCAGCAGAATATCGGCACTATTCGATGC 5616 Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGA--CAAAGATGAGACGGCTGTGT 105050 ||| ||||| || ||||| || |||||| |||| |||||||||| |||||| | Sbjct 5617 AGT---AATCTGTGCACAGAGATTGTGGAAT--ACAGCTCCAAAGATGAGGTGGCTGTCT 5671 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATT 105110 ||||||| ||||| ||||| || || || |||| | || |||| | |||| Sbjct 5672 GTAACCTGGCATCGATCGCCCTGAACATGTTTGTGAACGTAGCTGAGAAGAAGTACGATT 5731 Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170 | | ||| | | ||||| || ||||| || || | || ||||| | || ||||||| Sbjct 5732 TTAAGAAATTGAAGGAAGTGACCAAAACGGTGACAAGGAATCTAAATAAGGTGATTGATA 5791 Query 105171 GAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229 |||| ||| ||||| ||| || | ||| ||||||||||| ||||| || || Sbjct 5792 TCAATTATTATCCCGTACCAGAG-GCGAAAACATCGAATATGAGACATCGTCCGATCGGA 5850 Query 105230 CTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCT 105264 | ||||| ||||| | || || | ||||| || Sbjct 5851 ATTGGTGTCCAGGGCTTGGCAGACGCCTTCATCCT 5885 >seq4345 Length=10194 Score = 96.9 bits (106), Expect = 4e-15 Identities = 273/409 (67%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 168276 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 168335 ||||||| || || ||||| | || ||||| | ||||| || | |||| ||||| Sbjct 5806 AACCCGTTCCAATGCCCTCCGCGCCATTCACCAACACCATTGGAATAATTGGAATGTACC 5747 Query 168336 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 168395 | | |||||||| | | ||| || | |||||| | | ||| ||||| || | Sbjct 5746 ACTGCGGCTCAATCTTGTGGTTATCCTCGTACAAATACGTCAAAATGGGATCGTCCAGGG 5687 Query 168396 GATCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 168455 ||| |||||| | | ||| | || |||| || ||||| || | | | || | Sbjct 5686 GATGGAAGATCATCCTGGCCAACTGCGTCAGCTGCGTGAAGATGTAACGAG---GCGAGG 5630 Query 168456 CA---TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGA 168512 || ||||| || || | | ||| || |||||| ||| | |||| || ||||||| Sbjct 5629 CAGAGTCCTTGCCTCCGTTCAAACGGGTTCCAAACGAACCGCTCGGCAGCAGCAGATTGA 5570 Query 168513 TATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACT- 168571 | ||||| |||| | | | | |||||| |||| ||||| | || | || |||| Sbjct 5569 TGTTGTTGCTGCCCACGAAATTCTGCGCCAAATTGATGATCGTCTG-GC-ACAGGGACTG 5512 Query 168572 -TCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGC-CAACTGCGCCACTTTCA 168629 || |||||||||||| | | | | || || || |||| |||||||||||| |||| Sbjct 5511 CTCCCCGTGGTGGTACTCGGACGTGTGCGCCACCAAA-CCGCTCAACTGCGCCACCTTCA 5453 Query 168630 TCTCATCCTT---GAGATTC-TTGTGG--AAGCATGCGTACATAACCTT 168672 |||| | ||| || ||| |||| | ||||| | |||||| | ||| Sbjct 5452 TCTCGTTCTTCTCCAGCTTCTTTGTCGCAAAGCACGTGTACATGATCTT 5404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582948128466640