Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4345 96.9 4e-15 seq35853 91.5 2e-13 seq25828 87.8 2e-12 >seq4345 Length=10194 Score = 96.9 bits (106), Expect = 4e-15 Identities = 303/462 (66%), Gaps = 18/462 (4%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || |||||||| || || || |||| | ||| || | ||| || ||| || Sbjct 5804 CCCGTTCCAATGCCCTCCGCGCCATTCACCAACACCATTGGAATAATTGGAATGTACCAC 5745 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 | |||||| | || || || || || || |||||| || || ||| ||| Sbjct 5744 TGCGGCTCAATCTTGTGGTTATCCTCGTACAAATACGTCAAAATGGGATCGTCCAGGGGA 5685 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | ||| ||| | | || | ||| ||||||||||||| || | ||| | Sbjct 5684 TGGAAGATCATCCTGGCCAACTGCGTCAGCTGCGTGAAGATGTAACGAGGCGAGGCAGAG 5625 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 |||||||| || || || ||||||||| || ||| || || |||| |||| Sbjct 5624 TCCTTGCCTCCGTTCAAACGGGTTCCAAACGAACCGCTCGGCAGCAGCAGATTGATGTTG 5565 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGT---GCCCTGCAGACTCGCTTCA 152172 ||| ||||||||||||||| |||||||| | ||||| || | | |||| || || Sbjct 5564 TTGCTGCCCACGAAATTCTGCGCCAAATTGATGATCGTCTGGCACAG-GGACT-GC-TCC 5508 Query 152173 CCGTGGTGATAC---GCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCAT- 152228 |||||||| ||| | ||| ||| || | | | || |||||||||||||||||| Sbjct 5507 CCGTGGTGGTACTCGGACGTGTGCGCCACCA---AACCGCTCAACTGCGCCACCTTCATC 5451 Query 152229 --GTCCGTCGTCAGGTTCT---TCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGT 152283 || | || ||| |||| || | || | ||| || | ||| | |||| || Sbjct 5450 TCGTTCTTCTCCAGCTTCTTTGTCGCAAAGCACGTGTACATGATCTTTCTCTGGCCCGGC 5391 Query 152284 TTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 || || |||||||| | | ||||| || |||| ||||| Sbjct 5390 TTAAATCCGTCCACAATGCACGGAATGGATCGCTCATTGTCC 5349 >seq35853 Length=3953 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 55487 AACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAAC 55546 ||||| || || |||| |||||||||||||| || || ||||| ||| | || |||||| Sbjct 3841 AACTCTCTTCTGTTGGCCCCAATGCCAACCGCTTCCACAGCTCAAATCCTCGGAAACAAC 3782 Query 55547 GAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 || |||| ||||| |||||| ||||||||||| Sbjct 3781 GAATCGTTTGAGCCTTACACGTCCAACATCTAC 3749 >seq25828 Length=6072 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 55487 AACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAAC 55546 ||||| || || |||| |||||||||||||| || || ||||| ||| | || |||||| Sbjct 313 AACTCTCTTCTGTTGGCCCCAATGCCAACCGCTTCCACAGCTCAAATCCTCGGAAACAAC 372 Query 55547 GAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 || |||| ||||| |||||| | ||||||||| Sbjct 373 GAATCGTTTGAGCCTTACACGTCGAACATCTAC 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546922651182800