Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq19288 163 3e-35 seq22640 150 2e-31 >seq19288 Length=6598 Score = 163 bits (180), Expect = 3e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||||||||| || || |||||||| ||| | Sbjct 4475 ATGCAGATCTTCGTCAAGACATTGACCGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 4416 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||| || || |||||||||||||||||||| ||||| ||| Sbjct 4415 GACACTATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 4356 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| ||||| ||||| || ||||| | || ||||| | ||||| || Sbjct 4355 CAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGACGGCCGAACCCTGTCCGACTACAAC 4296 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||| |||||||| || Sbjct 4295 ATCCAGAAGGAGTCCACTCTCCA 4273 >seq22640 Length=7414 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || || || ||||| || || ||||| ||| | Sbjct 1461 AATGCAGATCTTCGTGAAGACCCTAACGGGGAAAACTATCACCCTCGAGGTGGAGCCCTC 1402 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| | ||||| || || |||||||||||||||||||| || ||||| Sbjct 1401 TGACACGATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCA 1342 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | ||||| || || ||||| || ||||||| || ||||| | ||||| || Sbjct 1341 GCAGCGATTGATTTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAA 1282 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || | || | || || |||||||| Sbjct 1281 CATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGACTCCGCGGTGG 1234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570004670852320