Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq19288 140 8e-28 seq16829 95.1 3e-14 seq16517 91.5 4e-13 >seq19288 Length=6598 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||||||||| || || |||| ||||| |||| || |||| || || Sbjct 4264 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCGTCC 4323 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||| || | || || || || || ||||| || |||||||| Sbjct 4324 TCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 4383 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||| ||||| |||| || || || | ||||| ||| Sbjct 4384 TGGATCTTGGCCTTCACATTCTCGATAGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTC 4443 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| || || | ||| | ||||| || Sbjct 4444 TTGCCGGTCAATGTCTTGACGAAGATCTGCATCTT 4478 >seq16829 Length=7840 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 7596 tttcttttttGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655 ||| ||| | |||||||| |||| || || || || ||||||||||| ||||||||||| Sbjct 7224 TTTTTTTATAGTTATGCCCATTATAATTGGAGGGTTTGGAAATTGATTAGTTCCTTTAAT 7283 Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 |||| || || |||||||| || || | | || ||| |||| | |||| | ||||| Sbjct 7284 ACTTGGGGCCCCAGATATGGCCTTCTCACGAATAAATAATTTAAGATCTTGACTTCTACC 7343 Query 7716 GCCTTCCTTATTTCT 7730 ||||| |||| || Sbjct 7344 TCCTTCTATATTACT 7358 >seq16517 Length=1609 Score = 91.5 bits (100), Expect = 4e-13 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||| ||||| |||||||||||||| | || ||||| ||||| |||| Sbjct 94 TTCTGGATGACCAAAGAATCAAAATAAATGTTGATATAAAATTGGATCCCCTCCACCTGC 35 Query 370732 TGGATCAAA-AAAGCTAGTATTAAAATTTCTATC 370764 || ||||| |||| | ||||||||||||| ||| Sbjct 34 AGGGTCAAAGAAAGAT-GTATTAAAATTTCGATC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191875931682884