Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq25027 307 9e-79 >seq25027 Length=9736 Score = 307 bits (340), Expect = 9e-79 Identities = 626/921 (68%), Gaps = 14/921 (2%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 || || || ||||||||||| || ||| ||||||||||| || || || || | | Sbjct 6301 ACTCCGAACTTTTGGTATTCACCGACCTTCTTCTCGAAGAAATTCGTCTTCCCCTCGAGC 6242 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 || ||| ||||| |||| || ||||| | | |||||| | ||||| | | | Sbjct 6241 GAGATAAACTCCATGAAATTGAAAGGATTTGGCGTGTTGTA--GATTTTCTCGACTCCCA 6184 Query 4368 GCTACA--AGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAA 4425 ||| || || | ||||| || |||||||| || || | ||| |||| |||||| | Sbjct 6183 GCTCCACTAGAAGACGGTCCGCGACAAATTCAATGTAAAAGGACATCAGTTTGCAGTTCA 6124 Query 4426 TTCCAATTAA-TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCT 4484 | || || | ||| || || || |||| |||||| || || ||||| || |||||| Sbjct 6123 TGCCGATCATGTCT-ACTGGAAGAGCGTCTGTCAAGAATTCCTGTTCAATGACCACGGCT 6065 Query 4485 TCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAAT 4544 || ||| || || | ||| || || | || || | || |||| | |||| Sbjct 6064 TCACGGATGATTTCAATAATTCGTTCCTTTGTCGGCTTCTGCACCAAGTGTTTGAACATG 6005 Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 | || || |||||||| |||| |||||||||| ||||||||| || || || || Sbjct 6004 AGGCAAGCGAAATCACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCATTGGAGAAGGTC 5945 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 || || ||||||| ||||| || || |||||||| |||| |||||| ||| || Sbjct 5944 AAACCAGGCATTAGACCTCGTTTCTTTAGCCAAAAGATAGAGGCAAAGCTTCCACTGAAA 5885 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 || |||||||| || || ||||| || | | || || || | | || || || Sbjct 5884 AAGATGCCTTCCACAGCTGCAAAAGCAATCACACGTTCTCCAAA---GTTCGCCTTATCA 5828 Query 4725 TTA---ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATA 4781 | ||||| || || ||||||| || || ||||| || || || | || | || Sbjct 5827 CTGGCGATCCAATTCAAGGCCCAGTCTGCCTTCTTCTTCACACAGGGCAGCGTTTCAATG 5768 Query 4782 GCGTTAAATAATTTACTTTTT-TCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 ||||| || | ||| | | || | || ||| ||||| || || | || || | ||| Sbjct 5767 GCGTTGAACAGAA-ACTCTCTCTCCACTGTGTCCTGAATGTACGTATTAATCAGAATGCT 5709 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 ||||||||||| |||| ||| || ||||| |||||||| ||||| ||| | | ||| || Sbjct 5708 GTACATTTCAGAGTGTACATTCTCCATAGCGATCTGAAACCCGTAGAAGAACCGAGCCTC 5649 Query 4901 TGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACT 4960 || || || || || | || || | ||| || ||||| || || || || |||||||| Sbjct 5648 GGTGACCTGCACCTCCTGACTGAACCGTTCCACCAAGTTCTCATTCACAATTCCGTCACT 5589 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTT 5020 |||||||||||| || | ||||| || || || | | || |||| | || | Sbjct 5588 GGCTGCAAAAAAGGCAAGCACATGGGAAATGAAATGCCTCTCACATGGCTGCATCTTCTC 5529 Query 5021 CCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 ||| | || || ||||||| || || || ||||| |||||||| || || || || || Sbjct 5528 CCAATCGGCCATGTCTTTAGACAAGTCCACCTCTTCCACAGTCCAGAAGGAAGCCTCAGC 5469 Query 5081 TTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTC 5140 |||||||| | |||||| || |||||||| || | ||| || || || || Sbjct 5468 CTTTTTGTAAAAGTCCCAAATGTCTTTGTACTGAATTGGGAATATCACGAACCTCCTGGG 5409 Query 5141 GTTAGGTGTAAGAAGCGGTTC 5161 ||| | | | ||||||||| Sbjct 5408 GTTCTCTTTCAAAAGCGGTTC 5388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426826392651038