Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq22640 125 2e-23 seq19288 93.3 1e-13 >seq22640 Length=7414 Score = 125 bits (138), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| || | || || || ||||| || ||||||||||| |||| | || | Sbjct 1242 GAGTCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 1301 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| |||||||| || | | ||||||||||| | ||||| Sbjct 1302 GCCATCCTCCAGCTGCTTT--CCGGCGAAAATCAATCGCTGCTGGTCCGGGGGAATTCCC 1359 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || |||||| |||| | |||| || ||| || || || Sbjct 1360 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCAGAGGGCTCCACCTCGAGG 1419 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || |||||||| ||||| || ||||||||||||| ||||||| Sbjct 1420 GTGATAGTTTTCCCCGTTAGGGTCTTCACGAAGATCTGCATT 1461 >seq19288 Length=6598 Score = 93.3 bits (102), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || | || ||||| ||||| || ||||||||||| |||| | || Sbjct 4254 CCTCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 4313 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 || || || || || || || ||||| || | | |||||| || | | ||||| Sbjct 4314 TCGGCCGTCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATTCC 4373 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || || || || ||| |||| | |||| || ||| || ||||| Sbjct 4374 CTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATAGTGTCGGAGGGCTCGACCTCAAG 4433 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCTT 152113 || || || ||||| || | ||||| ||||||| |||||| || || || Sbjct 4434 GGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATCTGCATCTTGCCGTT 4484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153186802152506