Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq25027 154 2e-32 >seq25027 Length=9736 Score = 154 bits (170), Expect = 2e-32 Identities = 582/903 (64%), Gaps = 24/903 (3%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCT 23263 ||| || || | ||||| ||||| || || | |||| ||||| ||||| ||||| |||| Sbjct 6305 CATGACTCCGAACTTTTGGTATTCACCGAC-CTTCTTCTCGAAGAAATTCGTCTTCCCCT 6247 Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATG 23323 | | || ||| ||||| |||| || ||||| | || || || | ||| | | Sbjct 6246 CGAGCGAGATAAACTCCATGAAATTGAAAGGATTTGGCGTGTTGTAGA----TTTTCTCG 6191 Query 23324 AT----AATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCA 23379 | | ||| || ||| | || || ||||||||||| || |||||| | Sbjct 6190 ACTCCCAGCTCCACTAGAAGACGGTCCGCGACAAATTCAATGTAAAAGGACATCAGTTTG 6131 Query 23380 TAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAA 23439 |||| || || || | | |||||||| || || |||||| | ||||||| Sbjct 6130 CAGTTCATGCCGATCATGTCTACTGGAAGAGCGTCTGTCAAGAATTCCTGTTCAATGACC 6071 Query 23440 ACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTA---AATAC 23496 || || || || |||| |||||| | ||| | | || | | | | | Sbjct 6070 ACGGCTTCACGGATGATTT---CAATAATTCGTTCCTTTGTCGGCTTCTGCACCAAGTGT 6014 Query 23497 TTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTA 23556 || |||| | || || |||||||| || || ||||| || | ||||| |||||| Sbjct 6013 TTGAACATGAGGCAAGCGAAATCACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCATTG 5954 Query 23557 GAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT 23616 || || || || || ||||||| |||||||| || | |||||| || | ||||| | Sbjct 5953 GAGAAGGTCAAACCAGGCATTAGACCTCGTTTCTTTAGCCAAAAGATAGAGGCAAAGCTT 5894 Query 23617 CCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCA 23676 || || || || || || ||||| ||||| || | | |||| ||||| | || Sbjct 5893 CCACTGAAAAAGATGCCTTCCACAGCTGCAAAAGCAATCACACGTTCTCCAAAGTTCGCC 5834 Query 23677 TTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTT 23736 |||| | | ||||| || | ||| | |||||| || ||||| | ||| Sbjct 5833 TTATCACTGGCGATCCAATTCAAGGCCCAGTCTGCCTTCTTCTTCACACAGGGCAGCGTT 5774 Query 23737 TCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTT--ATATATGTATCAATTA 23794 ||||| || || || ||||| | | ||| || | | | | || || |||| ||| | Sbjct 5773 TCAATGGCGTTGAACAGAAAC--TCTCTCTCCACTGTGTCCTGAATGTACGTATTAATCA 5716 Query 23795 GTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATC 23854 | | || ||||||||||| || | ||| || ||||| ||||||||||| || || | | Sbjct 5715 GAATGCTGTACATTTCAGAGTGTACATTCTCCATAGCGATCTGAAACCCGTAGAAGAACC 5656 Query 23855 TAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATAC 23914 ||| || | | || || || | | || | || | || || || || ||||| | Sbjct 5655 GAGCCTCGGTGACCTGCACCTCCTGACTGAACCGTTCCACCAAGTTCTCATTCACAATTC 5596 Query 23915 CATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA--GTTGA 23972 | ||||| || ||||| || ||||| |||| || ||||| || ||| || | || Sbjct 5595 CGTCACTGGCTGCAAAAAAGGCAAGCACATGGGAAATGAAATGCCTCTCA-CATGGCTG- 5538 Query 23973 TAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACT 24032 | || | |||||| || ||||| || || || || || || || ||||| || Sbjct 5537 CATCTTCTCCCAATCGGCCATGTCTTTAGACAAGTCCACCTCTTCCACAGTCCAGAAGGA 5478 Query 24033 TGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092 ||| || || || | |||||| || || | || ||||| ||||| ||||| Sbjct 5477 AGCCTCAGCCTTTTTGTAAAAGTCCCAAATGTCTTTGTACTGAATTGGGAATATCACGAA 5418 Query 24093 TCT 24095 || Sbjct 5417 CCT 5415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521208443320400