Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq19288 131 1e-25 seq22640 127 1e-24 >seq19288 Length=6598 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || ||||| | | ||||| ||| || ||| |||||| ||||||||||| ||| Sbjct 4246 ATACCTCCCCTCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCG 4305 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | || || |||| ||||||||||| || || || ||||||||||||||||||| Sbjct 4306 GACAGGGTTCGGCCGTCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGG 4365 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287 || | || ||||| ||| ||||| ||||| | | || ||||||| || || Sbjct 4366 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATAGTGTCGGAGGGCTCG 4425 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| || || | ||||| |||||||| ||||| Sbjct 4426 ACCTCAAGGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATCTGCAT 4475 >seq22640 Length=7414 Score = 127 bits (140), Expect = 1e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||| | ||||| ||| || ||| |||||| ||||||||||| |||| || ||| Sbjct 1243 AGTCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 1302 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| ||||| || ||||| |||||||| || | || | || ||| Sbjct 1303 CCATCCTCCAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGAATTCCCTCC 1362 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | | | || ||||| | || |||||||| | || Sbjct 1363 TTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCAGAGGGCTCCACCTCGAGGGTG 1422 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| ||||||||||||||||| ||||| Sbjct 1423 ATAGTTTTCCCCGTTAGGGTCTTCACGAAGATCTGCAT 1460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359802242692662