Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq67 100 6e-16 seq43 100 6e-16 seq21581 95.1 3e-14 seq123 95.1 3e-14 seq35 95.1 3e-14 >seq67 Length=1615038 Score = 100 bits (110), Expect = 6e-16 Identities = 269/408 (66%), Gaps = 4/408 (1%) Strand=Plus/Minus Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAA 61143 ||| ||||||||| || || || || ||||| ||||| |||| || ||||| |||| Sbjct 293101 TTTATCAAGCATCTACCTCAGAGCTTTATGGGAAAGTCGTTGAAACGCCACAAACTGAAA 293042 Query 61144 GGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTT 61203 ||||| || ||||| | || |||| ||| || | || | | |||||| Sbjct 293041 AAACTCCTTTCTATCCAAGATCTCCTTATGCATGTGCCAAGATGTATGGATTTTGGATTG 292982 Query 61204 GTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACG 61263 | |||||| || || | || | ||||||| || || ||| ||| ||||||| Sbjct 292981 TGATAAATTATCGAGAAGCATACGATATGTTTGCTTGCAATGGTATTCTTTTTAATCACG 292922 Query 61264 AGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGC--AAA 61321 | || | ||||| | | || || ||| | |||||||| | | || || ||| Sbjct 292921 AATCACCAAGGAGAGGAGAAAATTTCGTCACTAGAAAAATTACAAGAACTGTCGCCAAAA 292862 Query 61322 TATTTTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTG 61381 ||| ||||| | || | | || | || ||||| | || || || | ||||| Sbjct 292861 TATCTTTAAAACAACAGGAAGTT-CTTGAA-CTTGGAAATCTTGATTCAAAGCGCGATTG 292804 Query 61382 GGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGA 61441 ||| |||| ||| ||| |||| || |||||| ||||||||||| || | ||||| Sbjct 292803 GGGGCATGCCAGAGACTATGTCGAAGCAATGTGGATGATGTTGCAATTGGAAAAGCCAGA 292744 Query 61442 TGACTACGTTATTGCGACTGGACAGACGACGAGTGTCCGTGAATTCGT 61489 || | ||| ||||| || ||| | || |||||||| ||||| || Sbjct 292743 AGATTTCGTCATTGCAACAGGAGAAACCCACAGTGTCCGAGAATTTGT 292696 >seq43 Length=2293527 Score = 100 bits (110), Expect = 6e-16 Identities = 204/300 (68%), Gaps = 5/300 (2%) Strand=Plus/Minus Query 230384 AAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTC 230443 |||||||| ||||||| ||| ||| ||| | || ||| | || || | || ||| Sbjct 2197524 AAATCATTTCAGAAGCTGTTAAAATTGAACAAGAATTCCTCACCGATGCCTTGCC-TGTT 2197466 Query 230444 GCCTTATTGG-CATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGC 230502 | | |||| |||||| ||||| ||| || ||||| || || || || || || Sbjct 2197465 AACATGTTGGGCATGAATTGCGAACTGATGTCTCAATACATTGAGTTTGTTGCTGATCGT 2197406 Query 230503 ATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATG 230562 || | | || | | || ||| ||| | |||||| | ||||| || || || ||| Sbjct 2197405 CTTCTCGGTGAATTGGGAGTCGAAAAAATCTACAACACAAAGAATCCTTTCAGCTTCATG 2197346 Query 230563 GAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG 230622 |||||||| |||||| | || || || ||||||||||||||| || | || ||||| Sbjct 2197345 GAGCTCATCTCGCTTGAGGGTAAAACAAACTTCTTCGAAAAGAAAGTTGGAGAGTATCAA 2197286 Query 230623 AGGCCTGGTGTGATG---AAGCCCGAAGACAATATTTTTGCTATTGACGATGATTTTTAA 230679 | |||| |||||| || | |||||| |||| | |||| | |||||||||| Sbjct 2197285 AAAGCTGGAGTGATGGCAAATCGTCTTGACAATGTTTTCACACTTGATGCTGATTTTTAA 2197226 >seq21581 Length=101 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||| ||||| | ||||| ||||||| | |||||||||||||||| Sbjct 76 GCCCGGCTAGCTCAGTCGGCAGAGCCCGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 17 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16 CCCACGTTGGGC 5 >seq123 Length=8196 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||| ||||| | ||||| ||||||| | |||||||||||||||| Sbjct 7633 GCCCGGCTAGCTCAGTCGGCAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 7574 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7573 CCCACGTTGGGC 7562 >seq35 Length=1012892 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||| ||||| | ||||| ||||||| | |||||||||||||||| Sbjct 835133 GCCCGGCTAGCTCAGTCGGCAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 835192 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 835193 CCCACGTTGGGC 835204 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||| ||||| | ||||| ||||||| | |||||||||||||||| Sbjct 835793 GCCCGGCTAGCTCAGTCGGCAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 835734 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 835733 CCCACGTTGGGC 835722 Score = 95.1 bits (104), Expect = 3e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||| ||||||||||||| ||||| | ||||| ||||||| | ||||||||||||| Sbjct 836154 CTAGCCCGGCTAGCTCAGTCGGCAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCG 836095 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 836094 AGCCCCACGTTGGGC 836080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057501931268690