Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq43 161 1e-34 >seq43 Length=2293527 Score = 161 bits (178), Expect = 1e-34 Identities = 419/630 (67%), Gaps = 14/630 (2%) Strand=Plus/Plus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 |||||||| ||||| ||||| ||||| || || || ||||||||| |||||||| Sbjct 2197305 TTTTCGAAGAAGTTTGTTTTACCCTCAAGCGAGATGAGCTCCATGAAGCTGAAAGGATTC 2197364 Query 16754 GTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811 | | || | || |||| || | |||| ||| ||| | | ||| || ||||| | Sbjct 2197365 TTTGTGTTGTAGATTTTTTCGACT--CCCAATTCACCGAGAAGACGATCAGCAACAAACT 2197422 Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT--ACCGGAAGAGCTTC 16869 | || ||||| |||| | |||||| ||||| || | | | || || || | || || Sbjct 2197423 CAATGTATTGAGACATCAGTTCGCAATTCATGCCCA--ACATGTTAACAGGCAAGGCATC 2197480 Query 16870 CGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTC 16929 || | ||| ||| || || ||| ||||| ||| || ||| |||||| | Sbjct 2197481 GGTGAGGAATTCTTGTTCAATTTTAACAGCTTCTGAAATGATTTCGACAATTCGTTCTTT 2197540 Query 16930 GGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTC 16989 | ||| | || |||||| ||||||| ||| || ||||| ||||| || || || Sbjct 2197541 TGGTGGTTTCTGGACAAGATGACGGAACATCAAACAAGCAAAATCACAATGCAAGCCTTC 2197600 Query 16990 GTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAA 17049 ||| | || | ||| || ||||||||||| || |||||| ||| |||||||| | Sbjct 2197601 GTCACGTGAAATCAATTCATTGGAAAATGTCAATCCCGGCATCAATCCACGTTTCTTAAT 2197660 Query 17050 CCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGAT 17109 ||||||||| || || || ||| ||||| || || || || | |||||| || || Sbjct 2197661 CCAAAATATGGCAGCAAAACTTCCACTGAAGAAAATTCCTTCAACTGCTGCAAATGCAAT 2197720 Query 17110 TAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTT 17169 | || ||| | | | || | || | | ||||| || |||| || || || Sbjct 2197721 AATTCTTTCCCCAAAGTTGGCATTCTTACTGCTGATCCAGTTAATTGCCCAGTCAGCCTT 2197780 Query 17170 TTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAAT--AATTTCTCTTTTTCCTGTAG- 17226 | ||| | || || ||||| | || || ||| || ||| | | | || || Sbjct 2197781 CTTCTTCACACATGGCAATGTTTCGACAGCGTTGAATAAAAATTCACGCTCT-TTGGAGT 2197839 Query 17227 GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGC 17286 |||| || || || || || || | | |||||||| || |||| |||||||| || Sbjct 2197840 TTCGA--ATGTAAGTTTCAATAAGCAAGGAATACATTTCAGAATGTACATTCTCCATAGC 2197897 Query 17287 TATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 ||| ||||| || |||||||| || ||||| Sbjct 2197898 TATTTGAAAACCATAAAAGCAGCGTGCTTC 2197927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517391869548840