Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq63 168 5e-37 >seq63 Length=2199633 Score = 168 bits (186), Expect = 5e-37 Identities = 504/773 (65%), Gaps = 10/773 (1%) Strand=Plus/Minus Query 18579 TTTGGAATGCAAGCTCGATACAATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGT 18638 ||||||| ||| || | |||| | || || |||||||| | || || || ||||| Sbjct 1194492 TTTGGAACACAAATGCGTTTCAATCTTCGTGATCAATTTCCTTTGTTGACAACTAAGCGA 1194433 Query 18639 GTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCC 18698 || |||||||| || || | || ||| | | ||||| || | || || ||||| | Sbjct 1194432 GTATTTTGGAGAGCTGTAGCTGAGGAGCTTCTCTGGTTCATTCAAGGATCCACCGACGCT 1194373 Query 18699 AAAGAACTCGCCGCTAAAGATATACACATATGGGATATATACGGATCGAGCAAATTTCTA 18758 ||| ||| | ||| | || | || |||||| | || | | || ||||||| Sbjct 1194372 AAATTACTGCAAGAGAAAAACATTCGAATCTGGGATGGAAACAGCACAAGAGAATTTCTC 1194313 Query 18759 AATAGGAATGGCTTCCATAAAAGACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAG 18818 | ||| || | | | || || || | || || |||| ||||| ||| Sbjct 1194312 GACGCTTCTGGATTTCCACATCGTCAGGTTGGTGATTTGGGACCAGTTTATGGCTTTCAG 1194253 Query 18819 TGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTACAGC----AAGG 18874 ||| | |||||||| || |||||| || |||| | | ||||| |||| Sbjct 1194252 TGGCGTCATTTTGGTGCTGAATATGGCACATG-CAATGA---TGATTACACTGGTAAAGG 1194197 Query 18875 AATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAA-CCCAGAAAGCCGACGAA 18933 |||||| || ||| | ||||| || |||||||| ||| |||| | ||| || | Sbjct 1194196 AATCGACCAACTGAAGGAAGTTATCGAACGAATTAAAAGAAATCCCACTGA-CCGTCGCA 1194138 Query 18934 TGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACA 18993 | || || | |||||||||||| | || ||| |||| | | || || ||||| Sbjct 1194137 TTATCATGACAGCTTGGAATCCAATTCAGATTCCCGACATGGCATTGCCACCTTGTCATT 1194078 Query 18994 CGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGG 19053 || || ||||| || || | ||||| | || ||| | ||||| | || | Sbjct 1194077 GCTTGGTGCAATTTTATGTCGCTGATGGTGAGCTTAGTTGTCAATTGTACCAACGTTCAG 1194018 Query 19054 GGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAG 19113 || ||||| ||||| || || |||||||||||| ||||| | || || ||||| Sbjct 1194017 CTGACATGGGTCTTGGTGTTCCTTTCAACATTGCTTCTTATGCTTTACTCACTTACATGA 1193958 Query 19114 TAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATA 19173 | || ||||| || ||||||| || ||||| ||||||||| | || ||||| ||| Sbjct 1193957 TTGCTCATGTCACGAATCTTAAAATTGGCGATTTTATTCATACACTCGGCGATGCGCATG 1193898 Query 19174 TTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTC 19233 |||||||||||||||| || | || |||| || | | || ||| || |||| Sbjct 1193897 TTTACTTGAATCATATTGAGCCATTGAAAGCACAAATTGAACGTGTGCCACGTCCATTTC 1193838 Query 19234 CTTGCCTTAAAATTATTCGAAATGTAACAGATATAAACGACTTTAAATGGGACGATTTTC 19293 || | || |||| || | || | |||| ||||||| |||| || ||||| Sbjct 1193837 CTCAATTAAAGATTAAACGTCAAGTTGAAAATATTGACGACTTCAAATTTGAGGATTTCG 1193778 Query 19294 AGCTTGATGGATATAATCCACAccccccccTAAAAATGGAAATGGCTCTTTAA 19346 | || ||| || |||| |||| || | |||||||||||||| ||||| Sbjct 1193777 AAATTATTGGCTACGATCCTTACCCAACCATCAAAATGGAAATGGCGGTTTAA 1193725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399388299022335