Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq63 156 3e-33 >seq63 Length=2199633 Score = 156 bits (172), Expect = 3e-33 Identities = 412/626 (66%), Gaps = 10/626 (2%) Strand=Plus/Plus Query 101687 TCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACT 101746 ||||| |||| | || | || ||||| || | ||||| ||||| || ||| Sbjct 1193879 TCAATATGATTCAAGTAAACATGCGCATCGCCGAGTGTATGAATAAAATCGCCAATTTTA 1193938 Query 101747 AGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGC 101806 ||||| |||||||||||||||||| |||| | | || ||| ||||||||| || || Sbjct 1193939 AGATTCGTGACATGAGCAATCATGTAAGTGAGTAAAGCATAAGAAGCAATGTTGAAAGGA 1193998 Query 101807 ACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAG 101866 || || | ||||| |||||||| | ||| |||| |||||| ||||| |||||| | Sbjct 1193999 ACACCAAGACCCATGTCAGCTGAACGTTGGTACAATTGACAACTAAGCTCACCATCAGCG 1194058 Query 101867 ACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAA--A 101924 ||||||||||| || ||||||||| ||||| |||| | |||| |||||| Sbjct 1194059 ACATAAAATTGCACCAAGCAATGACAAGGTGGCAATGCCATGTCGGGAA--TCTGAATTG 1194116 Query 101925 CATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCA 101984 ||||||||| ||| | || | | || || || ||| |||| || || || | Sbjct 1194117 GATTCCAAGCTGTCATGATAATGCGACGGTCAGTGGGATTTCTTTTAATTCGTTCGATAA 1194176 Query 101985 ACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTT---ATATT 102041 | || | |||||| | ||||| || | ||||| || | | | ||||| Sbjct 1194177 CTTCCTTCAGTTGGTCGATTCCTTTACCAGTGTAATC---ATCATTGCATGTGCCATATT 1194233 Query 102042 CTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGT 102101 | || || ||||| | ||||||||| ||||| || ||||| | ||| || | | | | Sbjct 1194234 CAGCACCAAAATGACGCCACTGAAAGCCATAAACTGGTCCCAAATCACCAACCTGACGAT 1194293 Query 102102 CATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGC 102161 ||| ||| || | |||| ||| | | || ||||||| || | | | Sbjct 1194294 GTGGAAATCCAGAAGCGTCGAGAAATTCTCTTGTGCTGTTTCCATCCCAGATTCGAATGT 1194353 Query 102162 CAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAA 102221 || || ||| ||| || |||||| || ||||| | || || ||| Sbjct 1194354 TTTTCTCTTGCAGTAATTTAGCGTCGGTGGATCCTTGAATGAACCAGAGAAGCTCCTCAG 1194413 Query 102222 CAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAATTCATTTTCTAAACTAA 102281 | ||| ||||||||||||||| |||||| || || | ||||||| || | | | | Sbjct 1194414 CTACAGCTCTCCAAAATACTCGCTTAGTTGTCAACAAAGGAAATTGATCACGAAGATTGA 1194473 Query 102282 ACCTAGACTGTGTTCCAAAAATACTC 102307 | | |||||||||||||||||| Sbjct 1194474 AACGCATTTGTGTTCCAAAAATACTC 1194499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361146577475513