Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq48 91.5 1e-13 seq37 86.0 5e-12 seq889 82.4 6e-11 >seq48 Length=1955607 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||||||||| || |||||||| ||||| ||||| | Sbjct 622222 CCACCACGGAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTC 622281 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || || || || || || || | || | | |||||||| || Sbjct 622282 AAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGTGGA 622341 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||||| || || | | | || ||| || || | Sbjct 622342 ATTCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTTTCAATGGTGTCAGATGGTTCGACT 622401 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 || | ||| || ||||||||||| || |||||||| || ||||||||| |||| Sbjct 622402 TCAAGGGTGATAGTCTTGCCGGTCAAAGTTTTGACGAAAATTTGCATTCTGAA 622454 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||||||||| || || ||||||||||| ||||| | Sbjct 646732 CCACCACGGAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTC 646673 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || || || || || || || | || | | |||||||| ||| Sbjct 646672 AAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGA 646613 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||||||| || || | ||| || ||| || || | Sbjct 646612 ATTCCTTCCTTATCTTGGATCTTTGCCTTGACGTTTTCGATGGTGTCAGATGGTTCGACT 646553 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || || |||||||| || |||||||| Sbjct 646552 TCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 646506 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 ||||| || || || | ||| |||| ||||||||| || |||||||| ||||| ||||| Sbjct 621763 TTTCCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCG 621822 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 || || | | || || ||||| || || || | || | | |||||||| Sbjct 621823 CTCAAAGTGCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGT 621882 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | ||||||||||| ||||||| || || | | | || || || || Sbjct 621883 GGAATTCCTTCCTTGTCTTGGATCTTTGCCTTAACATTTTCAATCGTGTCTGATGGTTCA 621942 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | || ||||||||||| || || |||||||| || |||||||| Sbjct 621943 ACTTCAAGAGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 621992 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||||||||| || || ||||| ||||| ||||| | Sbjct 621994 CCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCGCTC 622053 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || || || || || || || |||| | | |||||||| || Sbjct 622054 AAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGA 622113 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | | || ||| || || | Sbjct 622114 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATCGTGTCAGATGGTTCGACT 622173 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| || |||||||| || |||||||| Sbjct 622174 TCAAGGGTGATGGTCTTGCCGGTCAATGTTTTGACGAAGATTTGCAT 622220 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||||||||| || || ||||| ||||| ||||| | Sbjct 646504 CCGCCACGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCGCTC 646445 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || || || || || || || |||| | | |||||||| || Sbjct 646444 AAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGA 646385 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | | || ||| || || | Sbjct 646384 ATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCAGATGGTTCGACT 646325 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| || |||||||| || |||||||| Sbjct 646324 TCAAGGGTGATGGTCTTGCCGGTCAATGTTTTGACGAAGATTTGCAT 646278 >seq37 Length=1894237 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 ||||| || || || | ||| |||| |||||| || || |||||||| ||||| ||||| Sbjct 798253 TTTCCACCACGGAGACGGAGAACCAAATGCAATGTTGATTCCTTTTGGATGTTGTAGTCG 798312 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 || || | | || || || || || || || | | | | |||||||| | Sbjct 798313 CTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGTTCAAACGTTGCTGGTCTGGG 798372 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | |||||||| || ||||||| || || | ||| || ||| || || Sbjct 798373 GGAATTCCTTCCTTATCTTGGATCTTTGCCTTGACGTTTTCGATGGTGTCAGATGGTTCG 798432 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | ||| ||||||||||| || || |||||||| || |||||||| Sbjct 798433 ACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 798482 >seq889 Length=890 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 ||||| || || || | ||| |||| ||||||||| || |||||||||||||| ||||| Sbjct 317 TTTCCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCG 258 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 || || | | || || || || || || || | || | | |||||||| | Sbjct 257 CTCAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGG 198 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | ||||||||||| |||||| ||| || | | | || || || || Sbjct 197 GGAATTCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCCGATGGTTCA 138 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | || || |||||||| || || || ||||| || |||||||| Sbjct 137 ACTTCAAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422136908853308