Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq48 134 1e-26 seq37 125 6e-24 seq889 120 3e-22 seq14265 91.5 1e-13 >seq48 Length=1955607 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || ||||||||||||||||| ||||||| |||||| ||| ||| Sbjct 646714 ACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 646655 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||||||| |||| | ||| ||||| || || || || || ||||| ||| Sbjct 646654 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGG 646595 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | ||||| |||||| | || | ||||| || | ||| | || || Sbjct 646594 ATCTTTGCCTTGACGTTTTCGATGGTGTCAGATGGT-TCGACTTCAAGGGTGATGGTCTT 646536 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| |||| |||||| || || || |||||| Sbjct 646535 GCCAGTCAAAGTTTTGACGAAGATTTGCATG 646505 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || ||||||||||||||||| ||||||| ||||||| ||| ||| Sbjct 645802 ACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTGCGCCCATCTTCG 645743 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||||||| |||| | ||| ||||| || || || || || ||||||||| Sbjct 645742 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGG 645683 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | ||| | |||||| | || | || || || | || | || || Sbjct 645682 ATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGT-TCAACTTCAAGAGTGATAGTCTT 645624 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| |||| |||||| || || || |||||| Sbjct 645623 GCCAGTCAAAGTTTTAACGAAGATTTGCATG 645593 Score = 123 bits (136), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||||||||| || | ||| |||||||| || |||||||||||||| | ||| || ||| Sbjct 847606 CAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTAAGAGTACGTCCATC 847547 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| | || || |||||| |||| | ||| |||||||| || || ||||| || || || Sbjct 847546 CTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGGAATGCCTTCTTTATC 847487 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 | ||| ||| ||| || | || | || |||| || | || ||||| | ||| | | Sbjct 847486 TTGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGT-TCAACCTCAAGGGTGATGG 847428 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| || |||| ||||| || || || |||||| Sbjct 847427 TTTTACCCGTCAATGTTTTGACGAAGATTTGCATG 847393 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||||||||| || | ||| |||||||| || |||||||||||||| | ||| || ||| Sbjct 850876 CAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTAAGAGTACGTCCATC 850817 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| | || || |||||| |||| | ||| |||||||| || || ||||| || || Sbjct 850816 CTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTT 850760 >seq37 Length=1894237 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || || |||||||||||||| ||||||| |||||| ||| ||| Sbjct 798730 ACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGGCCATCTTCG 798789 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||||||| |||| | ||| |||||||| || || || || ||||||||| Sbjct 798790 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGG 798849 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | ||| | |||||| | || | || || || | || | || || Sbjct 798850 ATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGT-TCAACTTCAAGAGTGATAGTCTT 798908 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| |||| |||||| || || || |||||| Sbjct 798909 GCCAGTCAAAGTTTTAACGAAGATTTGCATG 798939 >seq889 Length=890 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || || |||||||||||||| ||||||| |||||| ||| ||| Sbjct 296 ACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 237 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||||||| |||| | ||| ||||| || || || || || ||||||||| Sbjct 236 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGG 177 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | ||| | |||||||| || | || || || | || | || || Sbjct 176 ATCTTGGCTTTGACGTTTTCAATGGTGTCCGATGGT-TCAACTTCAAGAGTGATAGTCTT 118 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| ||| || || || || ||||| Sbjct 117 GCCAGTCAAAGTCTTGACGAAGATTTGCAT 88 >seq14265 Length=158 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||| || ||||||||||||||||| ||||||| |||||| ||| ||| Sbjct 61 ACCAAATGCAATGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 120 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 || || ||||||||| |||| | ||| ||||| || || Sbjct 121 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGG 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433704757699996