Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq47 109 6e-19 seq18 109 6e-19 seq48 102 9e-17 seq889 84.2 3e-11 >seq47 Length=5381421 Score = 109 bits (120), Expect = 6e-19 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||| || ||||||||||||| |||| Sbjct 73930 AAAAAAATCCTCCCCGGCCGGGAATCGAACCCGGGTCTTCCACGTGACAGGCGGAGATAC 73871 Query 60117 TCACCACTATACTACCGAGGATT 60139 ||||||||||||||||||||||| Sbjct 73870 TCACCACTATACTACCGAGGATT 73848 >seq18 Length=398192 Score = 109 bits (120), Expect = 6e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 228060 CTCCCCGGCCGGGAATCGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 228119 Query 60126 TACTACCGAGGATTG 60140 ||||||||||||||| Sbjct 228120 TACTACCGAGGATTG 228134 Score = 104 bits (114), Expect = 3e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| || ||| |||| ||||||||||||| ||||| || ||||||||||||| ||| Sbjct 227880 AAAAATAATCCTCCCCGGCCGGGAATCGAACCCGGGTCTTCCACGTGACAGGCGGAGATA 227939 Query 60116 CTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||| Sbjct 227940 CTCACCACTATACTACCGAGGA 227961 >seq48 Length=1955607 Score = 102 bits (112), Expect = 9e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||||||||||||| | ||| ||| || || || |||||||| ||||| || | Sbjct 847609 ACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTAAGAGTACGTCC 847550 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || |||| |||||||||||||| || | || ||||| || | ||| | || || || Sbjct 847549 ATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGGAATGCCTTCTTT 847490 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || ||| | |||| ||||| || | | ||| || | ||| || || | |||| Sbjct 847489 ATCT-TGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGTTCAACCTCAAGGGTGA 847431 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||||| ||||| | || || || ||||||||||| || Sbjct 847430 TGGTTTTACCCGTCAATGTTTTGACGAAGATTTGCATGTT 847391 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||||||||| || |||||||| || ||||| || || ||| || | || || Sbjct 621784 ACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 621843 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| || | || |||||||| | || | | |||||||| | Sbjct 621844 AGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 621903 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || ||| || | | | | |||||| | ||| || || | |||||||| ||| Sbjct 621904 ATCTTTGCCTTAACATTTTCAATCGTGTCTGATGGTTCAACTTCAAGAGTGATGGTCTTG 621963 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || || || ||||||||||| Sbjct 621964 CCAGTCAAAGTTTTGACGAAGATTTGCAT 621992 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||||||||| || |||||||| || ||||| || || ||| || | || || Sbjct 646030 ACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCTTCG 645971 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| |||||||| || | || ||||| || | || | | |||||||| | Sbjct 645970 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGG 645911 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 ||||| ||||| | | | ||||| | ||| || || | |||||||| ||| Sbjct 645910 ATTTTGGCTTTGACGTTTTCGATGGTGTCAGATGGTTCAACTTCAAGGGTGATGGTCTTG 645851 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || ||||||||||| Sbjct 645850 CCAGTCAAAGTCTTGACGAAGATTTGCAT 645822 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||||||||| || |||||||| || ||||| || || ||| || | || || Sbjct 646258 ACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 646199 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| |||||||| || | || |||||||| | || | | |||||||| | Sbjct 646198 AGTTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGG 646139 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || ||| || | || | | |||||| | ||| || || | |||||||| ||| Sbjct 646138 ATCTTTGCCTTAACATTCTCAATGGTGTCGGATGGTTCAACCTCAAGGGTGATGGTCTTG 646079 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || || || ||||||||||| Sbjct 646078 CCAGTCAAAGTTTTGACGAAGATTTGCAT 646050 >seq889 Length=890 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||||||||| || ||||||||||| ||||| || || ||| || | || || Sbjct 296 ACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 237 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| |||||||| || | || |||||||| | || | | |||||||| | Sbjct 236 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGG 177 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || ||||| | | | ||||| | ||| || || | ||||| || ||| Sbjct 176 ATCTTGGCTTTGACGTTTTCAATGGTGTCCGATGGTTCAACTTCAAGAGTGATAGTCTTG 117 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || ||||||||||| Sbjct 116 CCAGTCAAAGTCTTGACGAAGATTTGCAT 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571647748729640