Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq51 136 6e-27 seq48 104 3e-17 seq37 87.8 3e-12 >seq51 Length=676905 Score = 136 bits (150), Expect = 6e-27 Identities = 194/271 (72%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 10359 AAAAGTGCATATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGA--TT 10416 || || |||||||||| | | || | || | || |||| | | ||||| || || Sbjct 449944 AATAGCGCATATGATTGTGTAATTCCTGCTCGTGGTAAACTCATTGTTAAAACCGACATT 449885 Query 10417 TAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTC 10476 || || ||| ||||| |||||||||||| | | ||||| |||||| ||||| Sbjct 449884 CAA--ATTGAACTTCCTGAAGGATGTTATGGTCGTGTTGCTCCACGATCTGGCTTAGCAG 449827 Query 10477 TAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGG 10536 ||| || ||||||||| |||| ||||| || ||||||||||||||| |||| || || | Sbjct 449826 CAAAGAACTTTATTGATGTTGGTGCTGGCGTCATTGACGAAGATTATCGAGGCAACGTTG 449767 Query 10537 GAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATAT 10596 | || || | ||||||||||| || || ||| |||| | ||| |||||||| Sbjct 449766 GCGTTGTAATGTTTAATCATTCCGATCTCGAATTTGCTATAAGCAAAGGTGATAGAATTG 449707 Query 10597 CTCAATTAATATGTGAAAAAATTTTATATCC 10627 | || ||||| |||||| ||||| ||||| Sbjct 449706 CACAGTTAATCTGTGAACGAATTTATTATCC 449676 >seq48 Length=1955607 Score = 104 bits (114), Expect = 3e-17 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | || |||||||| | || || ||||| || || ||||| | Sbjct 847620 CCACCACGAAGACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTA 847561 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| |||||||| || ||||| || ||||| | ||||||||| || ||| Sbjct 847560 AGAGTACGTCCATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGGA 847501 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||||| || ||| || Sbjct 847500 ATGCCTTCTTTATCTTGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGTTCAACC 847441 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 || || ||||| |||||||| || |||||||| | ||| |||||||| || Sbjct 847440 TCAAGGGTGATGGTTTTACCCGTCAATGTTTTGACGAAGATTTGCATGTT 847391 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| ||||| ||||| || || || || || | ||| | || ||| || Sbjct 646030 ACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCTTCG 645971 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||| |||||||| || ||||| | ||||||||| |||||||||||||| || ||||| Sbjct 645970 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCTTG 645912 >seq37 Length=1894237 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/228 (67%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||| | | |||||||| ||||| ||||| ||| || || || || || Sbjct 798712 CCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGA-ATGTTGTAGTCGCT 798770 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | || ||| || | ||| |||||||| || ||||| | ||||||||| || || Sbjct 798771 CAAAGTGCGGCCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGG 798830 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||||||||| || ||||| || ||||| ||| || Sbjct 798831 AATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCAAC 798890 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||| || ||||| || || || || || ||||||| ||| |||||||| Sbjct 798891 TTCAAGAGTGATAGTCTTGCCAGTCAAAGTTTTAACGAAGATTTGCAT 798938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743305544776960