Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq43 235 5e-57 >seq43 Length=2293527 Score = 235 bits (260), Expect = 5e-57 Identities = 488/717 (68%), Gaps = 22/717 (3%) Strand=Plus/Plus Query 15882 AACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACA 15941 || ||||||||||| ||| || | || ||||| || ||||| ||| ||| Sbjct 2197222 AAATTTAAAAATCAGCATCAAGTGTGAAAACATTGTCAAGACGATTTGCCATCACTCCAG 2197281 Query 15942 TTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATAT 16001 ||||||||| || | |||| ||||||| ||||| |||||||| || || | || || Sbjct 2197282 CTTTTTGATACTCTCCAACTTTCTTTTCGAAGAAGTTTGTTTTACCCTCAAGCGAGATGA 2197341 Query 16002 TTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACA 16061 ||||| || |||||||| |||| ||| ||| ||| ||||||||| | | Sbjct 2197342 GCTCCATGAAGCTGAAAGGATTCTTTGTGTTGTAGATTTTTTCGACTCCCAATTC-ACCG 2197400 Query 16062 ATAAT-CTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 | || | ||| || ||||| || || || || ||| | || || ||||| || | Sbjct 2197401 AGAAGACGATCAGCAACAAACTCAATGTATTGAGACATCAGTTCGCAATTCATGCCCAAC 2197460 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTC---AATG 16177 | |||||||| | || || || | || | || ||| || ||||| ||||| |||| Sbjct 2197461 ATGTTAACAGGCAAGGCATCGGTGAGGAATTCTTGTTCAATTTTAACAGCTTCTGAAATG 2197520 Query 16178 ATT---ATATCTCTTACTACACTATTTAACGGAGGGTTTA--ATAAG-TGTTTAAACATT 16231 ||| | | || | || ||| || || || | ||| || ||||| Sbjct 2197521 ATTTCGACAATTCGTTCT------TTT---GGTGGTTTCTGGACAAGATGACGGAACATC 2197571 Query 16232 ATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTA 16291 | ||||||||||||||||||||| |||||||| | || || || || |||||||| Sbjct 2197572 AAACAAGCAAAATCACAATGCAAGCCTTCGTCACGTGAAATCAATTCATTGGAAAATGTC 2197631 Query 16292 AGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAG 16351 | || ||||| | ||| ||||| |||||||||||||| || ||||| ||| ||| Sbjct 2197632 AATCCCGGCATCAATCCACGTTTCTTAATCCAAAATATGGCAGCAAAACTTCCACTGAAG 2197691 Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411 || || ||||||||||| |||||||||| | || || || | | ||| ||||| Sbjct 2197692 AAAATTCCTTCAACTGCTGCAAATGCAATAATTCTTTCCCCAAAGTTGGCATTCTTACTG 2197751 Query 16412 tctatccattttttagcccaatttgctttttgtttAACACA-GTTCATGTTCTCTATTGC 16470 ||||| || | ||||| | || || | || ||||| | ||||| || | || Sbjct 2197752 CTGATCCAGTTAATTGCCCAGTCAGCCTTCTTCTTCACACATGGCAATGTT-TCGACAGC 2197810 Query 16471 ATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATA 16530 || |||||| | | |||||| | | ||| ||||| || || || || ||| Sbjct 2197811 GTTGAATAAAAATTCACGCTCTTTGGAGTTTCGAATGTAAGTTTCAATAAGCAAGGAATA 2197870 Query 16531 CATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTC 16587 |||||| ||||| | ||||||||| ||||| ||||||||||||||||| | ||||| Sbjct 2197871 CATTTCAGAATGTACATTCTCCATAGCTATTTGAAAACCATAAAAGCAGCGTGCTTC 2197927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462374616591800