Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq48 107 1e-18 seq37 100 2e-16 >seq48 Length=1955607 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||||||||||||| || || || |||||| | ||| || || Sbjct 646702 GTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCA 646643 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || |||| | | ||| || || ||| | ||||||||||| || | | |||| Sbjct 646642 GCGAAGATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGGATCTTTGCCTTG 646583 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | | | |||||| || ||| ||||| ||||||| | ||||| ||||| ||| Sbjct 646582 ACGTTTTCGATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTT 646523 Query 18309 TTTACAAAAATTTGCAT 18325 || || || |||||||| Sbjct 646522 TTGACGAAGATTTGCAT 646506 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 |||||||| ||||| |||||||||||| || || || |||||| | ||| || || Sbjct 622252 GTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCA 622311 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || |||| | | ||| || || || | |||||||| || || | | |||| Sbjct 622312 GCGAAGATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTG 622371 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | ||| |||||| || ||| ||||| |||||| | ||||||||||| ||| Sbjct 622372 ACGTTTTCAATGGTGTCAGATGGTTCGACTTCAAGGGTGATAGTCTTGCCGGTCAAAGTT 622431 Query 18309 TTTACAAAAATTTGCATTTTTAAA 18332 || || |||||||||||| | ||| Sbjct 622432 TTGACGAAAATTTGCATTCTGAAA 622455 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 |||||||||||||| |||||||||||| || || || |||||| | ||| || || Sbjct 622024 GTTGATTCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCA 622083 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || | || | | ||| || || || | |||||||| || || | |||| Sbjct 622084 GCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTG 622143 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | ||| |||||| || ||| ||||| ||||||| | ||||||||||||||| Sbjct 622144 ACATTTTCAATCGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTGCCGGTCAATGTT 622203 Query 18309 TTTACAAAAATTTGCAT 18325 || || || |||||||| Sbjct 622204 TTGACGAAGATTTGCAT 622220 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 |||||||||||||| |||||||||||| || || || |||||| | ||| || || Sbjct 646474 GTTGATTCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTTCCA 646415 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || | || | | ||| || || || | |||||||| || || | ||| Sbjct 646414 GCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTA 646355 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | ||| |||||| || ||| ||||| ||||||| | ||||||||||||||| Sbjct 646354 ACATTTTCAATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTGCCGGTCAATGTT 646295 Query 18309 TTTACAAAAATTTGCAT 18325 || || || |||||||| Sbjct 646294 TTGACGAAGATTTGCAT 646278 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||||||||||||| || || | |||||| | ||| || || Sbjct 645790 GTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTGCGCCCATCTTCGAGTTGCTTTCCA 645731 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || |||| | | ||| || || ||| | |||||||| || || | | |||| Sbjct 645730 GCGAAGATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTG 645671 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | ||| ||||| || || ||||| ||||| | ||||| ||||| ||| Sbjct 645670 ACATTTTCAATGGTGTCTGATGGTTCAACTTCAAGAGTGATAGTCTTGCCAGTCAAAGTT 645611 Query 18309 TTTACAAAAATTTGCAT 18325 || || || |||||||| Sbjct 645610 TTAACGAAGATTTGCAT 645594 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||||||||||| ||||| || |||||||| ||| | || | ||| || Sbjct 847602 ACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTAAGAGTACGTCCATCCTCT 847543 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || || |||| | | ||| ||||| || | |||||| ||||| | Sbjct 847542 AATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGGAATGCCTTCTTTATCTTGA 847483 Query 18237 ATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | |||||| ||| | ||| || || || || |||| ||||||| |||| Sbjct 847482 ATCT-TTGCTTTGACATTCTCAATCGTATCCGATGGTTCAACCTCAAGGGTGATGGTTTT 847424 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || ||||||||||| || || |||||||| || Sbjct 847423 ACCCGTCAATGTTTTGACGAAGATTTGCATGTT 847391 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 18135 TCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAG 18194 |||||||| |||||||||||| || || || |||||| | ||| ||||| || || Sbjct 647380 TCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCAGCGAAG 647321 Query 18195 ATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTG 18253 || | | ||| || || || | ||||| || || |||| | || ||||| | Sbjct 647320 ATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATTT-TGGCTTTGACGTT 647262 Query 18254 TGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTAC 18313 | | | |||||| || ||| ||||| ||||||| | ||||| ||||| ||||| || Sbjct 647261 TTCGATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGAC 647202 Query 18314 AAAAATTTGCAT 18325 || |||||||| Sbjct 647201 GAAGATTTGCAT 647190 >seq37 Length=1894237 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| || | ||||||||| ||||| |||||||||||| Sbjct 798255 TCCACCACGGAGACGGAGAACCAAATGCAATGTTGATTCCTTTTGGATGTTGTAGTCGCT 798314 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || || |||||| | ||| || || || || | | | ||| || || ||| Sbjct 798315 CAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGTTCAAACGTTGCTGGTCTGGGGG 798374 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| || | | |||||| | | | | |||||| || ||| Sbjct 798375 AATTCCTTCCTTATCTTGGATCTTTGCCTTGACGTTTTCGATGGTGTCAGATGGTTCGAC 798434 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||||| | ||||| ||||| ||||| || || |||||||| Sbjct 798435 TTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 798482 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 |||||||| |||||||||||||||||| || || | |||||| | ||| || || Sbjct 798742 GTTGATTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGGCCATCTTCGAGTTGCTTTCCA 798801 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || |||| | | ||| ||||| ||| | |||||||| || || | | |||| Sbjct 798802 GCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTG 798861 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | ||| ||||| || || ||||| ||||| | ||||| ||||| ||| Sbjct 798862 ACATTTTCAATGGTGTCTGATGGTTCAACTTCAAGAGTGATAGTCTTGCCAGTCAAAGTT 798921 Query 18309 TTTACAAAAATTTGCAT 18325 || || || |||||||| Sbjct 798922 TTAACGAAGATTTGCAT 798938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379234137591435