Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq48 89.7 4e-13 >seq48 Length=1955607 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 24828 CATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATC 24887 || |||||| || || || ||||| || || || ||||| || ||| | || || ||| | Sbjct 847390 CAACATGCAAATCTTCGTCAAAACATTGACGGGTAAAACCATCACCCTTGAGGTTGAACC 847449 Query 24888 GAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 || | | || | ||| || | ||| ||| | ||||||||| | ||| || Sbjct 847450 ATCGGATACGATTGAGAATGTCAAAGCAAAGATTCAAGATAAAGAAGGCATTCCGCCAGA 847509 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 ||||||||||| || | || || || ||| | || ||| ||| | | |||||| Sbjct 847510 TCAGCAACGTTTGATCTTCGCTGGTAAGCAATTAGAGGATGGACGTACTCTTAGCGATTA 847569 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||| ||||||||| | || |||||||| ||||| || | || || ||| Sbjct 847570 CAACATCCAGAAAGAGTCAACACTTCATTTGGTGTTGCGTCTTCGTGGTGGT 847621 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| || || || ||||| || |||||||| || || ||| | || |||||| | Sbjct 646277 CATGCAAATCTTCGTCAAAACATTGACCGGCAAGACCATCACCCTTGAAGTCGAACCATC 646336 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | |||| |||||||| || || | || ||||| | || ||||| Sbjct 646337 TGACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCA 646396 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||||||||| || | || || || ||||| |||||| ||| ||| ||| |||| Sbjct 646397 GCAACGTTTGATTTTCGCTGGAAAGCAACTCGAAGATGGTCGCACTTTGAGCGACTACAA 646456 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGT 25040 ||| || ||||| | || | ||||| || Sbjct 646457 CATCCAAAAAGAATCAACTTTGCATTTGGT 646486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418182854324960