Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq48 136 4e-27 seq37 127 2e-24 seq889 118 1e-21 seq55 100 3e-16 seq64 86.0 6e-12 >seq48 Length=1955607 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | ||| || || | || || || ||||| ||||| || ||||| Sbjct 646049 GCCGCCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCT 645990 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||||| || || ||||| |||||| |||||||||||| ||||| Sbjct 645989 CAAAGTGCGGCCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGAGG 645930 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| |||||| ||| | | ||| | ||||| | || || || Sbjct 645929 AATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTTTCGATGGTGTCAGATGGTTCAAC 645870 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | |||||||| ||||| || || ||||| |||||||| Sbjct 645869 TTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 645822 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| || || | || || |||||||||||||| || ||||| Sbjct 645821 GCCACCGCGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCT 645762 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | |||||||| || || ||||| |||||| ||||||||| || || || Sbjct 645761 CAAAGTGCGCCCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGG 645702 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| ||| || | | ||| | ||||| | || || || Sbjct 645701 AATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCAAC 645642 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | |||||||| ||||| ||||| ||||| |||||||| Sbjct 645641 TTCAAGAGTGATAGTCTTGCCAGTCAAAGTTTTAACGAAGATTTGCAT 645594 Score = 129 bits (142), Expect = 6e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 139574 TCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 |||||||| ||||| || ||||||| |||| |||||||| || || ||||| || Sbjct 647380 TCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCAGCGAAG 647321 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT 139693 |||| ||||||||| || || || || ||||||||||| |||||| ||| | | | Sbjct 647320 ATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTT 647261 Query 139694 TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 || | ||||| | || || || |||| ||| | |||||||| ||||| ||||| ||| Sbjct 647260 TCGATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACG 647201 Query 139754 AATATTTGCAT 139764 || |||||||| Sbjct 647200 AAGATTTGCAT 647190 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| || || | || || || ||||| ||||| || ||||| Sbjct 622221 GCCACCACGGAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCT 622280 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||||| || || ||||| |||||| ||||||||| || || || Sbjct 622281 CAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGTGG 622340 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| ||| || | | ||| | ||||| | || || || Sbjct 622341 AATTCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTTTCAATGGTGTCAGATGGTTCGAC 622400 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | |||||||||||||| ||||| ||||| |||||||| Sbjct 622401 TTCAAGGGTGATAGTCTTGCCGGTCAAAGTTTTGACGAAAATTTGCAT 622448 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | ||| || || | || || |||||||| ||||| || ||||| Sbjct 646505 GCCGCCACGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCGCT 646446 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||||| || || ||||| | |||| ||||||||| || || || Sbjct 646445 CAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAAATCAAACGTTGCTGGTCTGGTGG 646386 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | ||| | ||||| | || || || Sbjct 646385 AATTCCTTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGTGTCAGATGGTTCGAC 646326 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | |||||||||||||| ||||| ||||| |||||||| Sbjct 646325 TTCAAGGGTGATGGTCTTGCCGGTCAATGTTTTGACGAAGATTTGCAT 646278 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| || || | || || |||||||||||||| || ||||| Sbjct 646733 GCCACCACGGAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCT 646674 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||||| || || ||||| |||||| ||||||||| || || || Sbjct 646673 CAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGG 646614 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| ||| || | | ||| | ||||| | || || || Sbjct 646613 AATTCCTTCCTTATCTTGGATCTTTGCCTTGACGTTTTCGATGGTGTCAGATGGTTCGAC 646554 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | |||||||| ||||| ||||| ||||| |||||||| Sbjct 646553 TTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 646506 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| || || | || || |||||||| ||||| || ||||| Sbjct 621993 GCCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGGATGTTGTAGTCGCT 622052 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||||| || || ||||| | |||| ||||||||| || || || Sbjct 622053 CAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAAATCAAACGTTGCTGGTCTGGTGG 622112 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | ||| | ||||| | || || || Sbjct 622113 AATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATCGTGTCAGATGGTTCGAC 622172 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | |||||||||||||| ||||| ||||| |||||||| Sbjct 622173 TTCAAGGGTGATGGTCTTGCCGGTCAATGTTTTGACGAAGATTTGCAT 622220 Score = 123 bits (136), Expect = 2e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || |||| || |||||||| || ||||| |||||||| Sbjct 847620 CCACCACGAAGACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTA 847561 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || | || |||||||| |||||| |||||||||||| || || Sbjct 847560 AGAGTACGTCCA-TCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGG 847502 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||||||||||| || ||| | |||| ||| | | || | || || | || || | Sbjct 847501 AATGCCTTCTTTATC-TTGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGTTCAA 847443 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | || || || ||||| ||||| ||||| |||||||| Sbjct 847442 CCTCAAGGGTGATGGTTTTACCCGTCAATGTTTTGACGAAGATTTGCAT 847394 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || || | || || || ||||| ||||| || |||||| Sbjct 621766 CCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTC 621825 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||||||||| || ||||| |||||| ||||||||| || || || Sbjct 621826 AAAGTGCGACCATCTTCGAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGTGGA 621885 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| ||| || | | ||| | ||||| | || || || Sbjct 621886 ATTCCTTCCTTGTCTTGGATCTTTGCCTTAACATTTTCAATCGTGTCTGATGGTTCAACT 621945 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | |||||||| ||||| ||||| ||||| |||||||| Sbjct 621946 TCAAGAGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 621992 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCG 139607 |||||| || || |||| || |||||||| || ||||| |||||||| | || | || Sbjct 850879 ACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTAAGAGTACGTCC 850820 Query 139608 AGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 139667 | || || | || |||||||| |||||| |||||||||||| || || |||||||||| Sbjct 850819 A-TCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTT 850761 Query 139668 T 139668 | Sbjct 850760 T 850760 >seq37 Length=1894237 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| || || | || || || ||||||||||| || ||||| Sbjct 798711 GCCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCGCT 798770 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||||| || || ||||| |||||| |||||||||||| || || Sbjct 798771 CAAAGTGCGGCCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGG 798830 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| ||| || | | ||| | ||||| | || || || Sbjct 798831 AATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCAAC 798890 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | |||||||| ||||| ||||| ||||| |||||||| Sbjct 798891 TTCAAGAGTGATAGTCTTGCCAGTCAAAGTTTTAACGAAGATTTGCAT 798938 >seq889 Length=890 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || || | || || || ||||||||||| || |||||| Sbjct 314 CCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCGCTC 255 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||| || || ||||| |||||| ||||||||| || || || Sbjct 254 AAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGA 195 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || ||| | | ||| | ||||| | || || || Sbjct 194 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCCGATGGTTCAACT 135 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | |||||||| ||||| || || ||||| ||||||||| Sbjct 134 TCAAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATTTGCATA 87 >seq55 Length=2529122 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || || || ||||||||||| || || | || | |||||| | || Sbjct 2062103 TGAAGTGTGGATTCCTTCTGAATGTTATAGTCACTAAGAGTACGACCGTCTTCTAATTGC 2062044 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||||| |||||||||||| ||||| || ||||| ||||| ||| || Sbjct 2062043 TTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTGTCTTGGATCTTA 2061984 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | ||| | ||| || | ||||| || || | || | |||||||| || Sbjct 2061983 GCCTTGACATTTTCAATTGTATCTGATGGCTCGACTTCGAGAGTGATAGTCTTGCCAGTG 2061924 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| |||||||| Sbjct 2061923 AGAGTTTTCACGAAGATTTGCAT 2061901 >seq64 Length=2694604 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 153432 GGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGA 153491 || || | || ||||| |||||||||||| |||||||||| ||||| || || || ||| Sbjct 2451298 GGCATTCTCATCATGATAAATGCATCGGCTAAACCTTGAACTCCAATTCCAATTGGTCGA 2451239 Query 153492 TGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTA 153551 || ||||| || |||||||| || || | ||||| || || ||||| |||||| Sbjct 2451238 TGACGCATGTTGGATTTTTTAGCTTCTGGTATTGGATAAAAGTTCACATCGATGATTTTA 2451179 Query 153552 TT 153553 || Sbjct 2451178 TT 2451177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495916650389600