Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq43 271 7e-68 >seq43 Length=2293527 Score = 271 bits (300), Expect = 7e-68 Identities = 486/707 (69%), Gaps = 12/707 (2%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||||||| |||| | || |||||||| || || | || || || |||| Sbjct 2197227 TAAAAATCAGCATCAAGTGTGAAAACATTGTCAAGACGATTTGCCATCACTCCAGCTTTT 2197286 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || | |||| | ||||| |||||||| |||||||| || || || || ||| Sbjct 2197287 TGATACTCTCCAACTTTCTTTTCGAAGAAGTTTGTTTTACCCTCAAGCGAGATGAGCTCC 2197346 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 || || || ||||| ||| | | | ||| || || | ||| || | Sbjct 2197347 ATGAAGCTGAAAGGATTCTTTGTGTTGTAGATTTTTTCGACTCCCAATTCACCGAGAAGA 2197406 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 | |||||||| ||||||||| ||||||||||| | || |||||||| || | | || Sbjct 2197407 CGATCAGCAACAAACTCAATGTATTGAGACATCAGTTCGCAATTCATGCCCAACATGTTA 2197466 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 ||||| | || ||| | ||||||| ||| || ||||| ||| || || || Sbjct 2197467 ACAGGCAAGGCATCGGTGAGGAATTCTTGTTCAATTTTAACAGCTTCTGAAATGAT--TT 2197524 Query 13824 GTAATAATC--TCATTAGAAGGA----GGATATTTTAGATGTTTAAAAATTAAACACGCA 13877 | | || || || | || ||| | ||||| || || ||||| ||| Sbjct 2197525 CGACAATTCGTTCTTTTGGTGGTTTCTGGACA----AGATGACGGAACATCAAACAAGCA 2197580 Query 13878 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13937 ||||||||||| | ||| || || | ||| | ||| || |||||||| ||||| ||| Sbjct 2197581 AAATCACAATGCAAGCCTTCGTCACGTGAAATCAATTCATTGGAAAATGTCAATCCCGGC 2197640 Query 13938 ATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCC 13997 |||||||| ||||| || | ||||||||| |||||||| || ||||| ||||| Sbjct 2197641 ATCAATCCACGTTTCTTAATCCAAAATATGGCAGCAAAACTTCCACTGAAGAAAATTCCT 2197700 Query 13998 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14057 |||||||| ||||| || || | || ||| ||||| || || || | ||||| Sbjct 2197701 TCAACTGCTGCAAATGCAATAATTCTTTCCCCAAAGTTGGCATTCTTACTGCTGATCCAG 2197760 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 || | ||||| |||| || || || | | | || |||||| | ||| || |||||| Sbjct 2197761 TTAATTGCCCAGTCAGCCTTCTTCTTCACACATGGCAATGTTTCGACAGCGTTGAATAAA 2197820 Query 14118 TATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177 |||| |||||| | || |||||| || |||||||| ||| |||||||||||| Sbjct 2197821 AATTCACGCTCTTTGGAGTTTCGAATGTAAGTTTCAATAAGCAAGGAATACATTTCAGAA 2197880 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 |||| || ||||||||||| ||||||||||||||||| | ||||| Sbjct 2197881 TGTACATTCTCCATAGCTATTTGAAAACCATAAAAGCAGCGTGCTTC 2197927 Score = 82.4 bits (90), Expect = 7e-11 Identities = 117/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 || |||||| | ||||||||| | ||||||||||| || || || ||| |||||| Sbjct 2197994 TGAACTTCCTGGCTAAATCTTTCAACTAAATTTTCATTCACGATGCCGTCAGATGCTGCA 2198053 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCG 14351 || |||||||||| | | ||||||| | || || || || ||||||| Sbjct 2198054 AAGAATGCCAATACATGTGAGATAAAGTGACGTTCGGTATCTTTAAGGCCATTCCAAT-- 2198111 Query 14352 GAT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 ||| | |||||| || ||||| ||||| ||||| |||||||| Sbjct 2198112 GATCAAGATCCTTTGACAGATCAACTTCTTCAACCGTCCAAAA 2198154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479585502794200