Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq43 253 2e-62 seq4 87.8 2e-12 >seq43 Length=2293527 Score = 253 bits (280), Expect = 2e-62 Identities = 482/708 (68%), Gaps = 14/708 (2%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||||||| |||| | || |||||||| || || | || || || |||| Sbjct 2197227 TAAAAATCAGCATCAAGTGTGAAAACATTGTCAAGACGATTTGCCATCACTCCAGCTTTT 2197286 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || | |||| | ||||| || ||||| |||||||| || || || || ||| Sbjct 2197287 TGATACTCTCCAACTTTCTTTTCGAAGAAGTTTGTTTTACCCTCAAGCGAGATGAGCTCC 2197346 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 || || ||| ||||| ||| | | | ||| || || | ||| | | Sbjct 2197347 ATGAAGCTGAAAGGATTCTTTGTGTTGTAGATTTTTTCGACTCCCAATTCACCGAGAAGA 2197406 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13551 | |||||||| ||||||||| ||||||||||| | || |||||||| || | | || Sbjct 2197407 CGATCAGCAACAAACTCAATGTATTGAGACATCAGTTCGCAATTCATGCCCAACATGTTA 2197466 Query 13552 ACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 13611 ||||| | || || | ||||||| ||| || ||||| || | ||| || Sbjct 2197467 ACAGGCAAGGCATCGGTGAGGAATTCTTGTTCAATTTTAACAGCTTC---TGAAATGATT 2197523 Query 13612 TTAATAATG---TCATTAGAAGGA----GGATATTTTAGATGTTTAAAAATTAAACACGC 13664 | | ||| || || | || ||| | ||||| || || ||||| || Sbjct 2197524 TCGACAATTCGTTCTTTTGGTGGTTTCTGGACA----AGATGACGGAACATCAAACAAGC 2197579 Query 13665 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13724 |||||||||||| | ||| || || | ||| | ||| || |||||||| ||||| || Sbjct 2197580 AAAATCACAATGCAAGCCTTCGTCACGTGAAATCAATTCATTGGAAAATGTCAATCCCGG 2197639 Query 13725 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 13784 ||||||||| ||||| || | ||||||||| ||||| || ||| ||||| ||||| Sbjct 2197640 CATCAATCCACGTTTCTTAATCCAAAATATGGCAGCAAAACTTCCACTGAAGAAAATTCC 2197699 Query 13785 CTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCA 13844 |||||||| ||||| || || | || ||| ||||| || || || | ||||| Sbjct 2197700 TTCAACTGCTGCAAATGCAATAATTCTTTCCCCAAAGTTGGCATTCTTACTGCTGATCCA 2197759 Query 13845 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 || | ||||| |||| || || || | | | || |||||||| || |||||||| Sbjct 2197760 GTTAATTGCCCAGTCAGCCTTCTTCTTCACACATGGCAATGTTTCGACAGCGTTGAATAA 2197819 Query 13905 ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 13964 | ||| |||||| | || |||||| || |||||||| ||| |||||||||||| Sbjct 2197820 AAATTCACGCTCTTTGGAGTTTCGAATGTAAGTTTCAATAAGCAAGGAATACATTTCAGA 2197879 Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14012 |||| || || |||||||| |||||||||||||| || | ||||| Sbjct 2197880 ATGTACATTCTCCATAGCTATTTGAAAACCATAAAAGCAGCGTGCTTC 2197927 >seq4 Length=2116169 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/132 (77%), Gaps = 7/132 (5%) Strand=Plus/Minus Query 138763 TATATTGGAAGTGCTAATATGGATTGGAGGTCTCTTTCTCAAGTTAAAGAACTTG--GTA 138820 ||| |||||||||| |||||||||||| | || | || |||||||||||||||| ||| Sbjct 838667 TATGTTGGAAGTGCAAATATGGATTGGCGTTCATTGTCACAAGTTAAAGAACTTGGTGTA 838608 Query 138821 TAGGTATTTAC-AATTCTTCATGTTTGGTAATGGATTTAATAAAAATCTTTAATGAGTAT 138879 | |||| || || | ||||||| | | | ||||||| ||| ||||| |||| ||| Sbjct 838607 TTGGTA---ACGAACTGTTCATGTCTTGCCAGTGATTTAACAAAGATCTTCAATGTTTAT 838551 Query 138880 TGTTATATTGGG 138891 || || ||||| Sbjct 838550 TGGGAT-TTGGG 838540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478446641179320