Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq20 161 1e-34 seq63 100 4e-16 seq2 87.8 3e-12 >seq20 Length=3259691 Score = 161 bits (178), Expect = 1e-34 Identities = 389/580 (67%), Gaps = 28/580 (5%) Strand=Plus/Plus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||| ||| | |||||||| || || ||||| || | | || ||||| ||||| || | Sbjct 2101866 TTTTCGGAAGAAGATGACACCAGCACGAGGTCCACGTAATGTTTTGTGTGTTGTCGTTGA 2101925 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCA-A 127219 |||| |||| | | ||||| || |||||||| | |||| |||| || | | Sbjct 2101926 AACAACGTCAGCAAATTCAAACGGCGATGGAATGACACCAGCTGCAA-CAAGTCCAGAGA 2101984 Query 127220 TGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTC 127279 | || || || || || | || | | ||| | ||||||||| || ||||||| | Sbjct 2101985 TATGGGCCATGTCAGCGAAGAGATAAGCTCCGTTTTGATCGGCAATTTCACGGAATCTTT 2102044 Query 127280 TATAGTCCAAGCGCCGAGGATAGCAACTGGT---GCCGGCTATGATTAGCCTAGGTTTGA 127336 ||||||| | | || | | | ||| || ||| || ||||| | |||| |||| Sbjct 2102045 TATAGTCGAGACAACG--GCT-GTAACAGGAAACGCCAGCGATGATGATTTTAGGCTTGA 2102101 Query 127337 ATAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCT 127396 | || || || |||| | ||||| ||||||| | ||| |||||| |||| || | Sbjct 2102102 AAAGCTTTGCTGTCTCTTCCAGTTTATCATAGTCAATGAGACCAGTCGCTGGATTGACTT 2102161 Query 127397 TGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACAC------GTTGCG------GA 127444 |||| ||||| |||||| |||| ||| ||||| || | |||| || Sbjct 2102162 TGTAAGGCATTGATTCGAAGAAGATTGACGTAGCTGAGATTCTTTTGTTGGCTGTCATGA 2102221 Query 127445 ATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTT 127504 |||| || |||| ||| || ||||| || | ||| | ||||||||||| | | || || | Sbjct 2102222 ATCCATGAGTCAAGTGACCACCGTCTGGTAAATCTAATCCCATGATTCGATCATGAGGCT 2102281 Query 127505 TAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACA 127564 || | | ||||||| || |||||||| || || || || || ||||| ||| | Sbjct 2102282 GAAGCAATGCAGTGTAAACTGCAAAGTTTGCTGGAGATCCAGAATAAGGTTGAACATTCG 2102341 Query 127565 CTCCCCATTCGGACTCGTTCA---AAT-TGAACGCTCTGAGACATCGCTGCTGTGCTAGC 127620 ||||||||| |||| |||| ||| | | ||| || || || || || || Sbjct 2102342 CTCCCCATT--GACT--TTCATCTAATCGGTAAGCTTCAAGTGCTCTCTTTTGAGCGAGA 2102397 Query 127621 AGTTCGATGCGATCGATAAACTCGTTACCACCATAGTATC 127660 || || || |||||||||||||||| || || || |||| Sbjct 2102398 AGCTCAATTTGATCGATAAACTCGTTTCCTCCGTAATATC 2102437 >seq63 Length=2199633 Score = 100 bits (110), Expect = 4e-16 Identities = 253/378 (67%), Gaps = 14/378 (4%) Strand=Plus/Minus Query 70226 TGGAATCC--TGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGT 70283 |||||||| | |||||| | | | |||||| | ||||| ||||| || |||| || | Sbjct 1194123 TGGAATCCAATTCAGATT--CCCGACATGGCATTGCCACCTTGTCATTGCTTGGTGCAAT 1194066 Query 70284 TTTAC-TCGT--ACGATG-GCAAA-TTGTCATGCTTAATGTATCAGAGGAGTGCCGACAT 70338 |||| ||| | | || || | |||||| | |||| || | || ||||| Sbjct 1194065 TTTATGTCGCTGATGGTGAGCTTAGTTGTCA-----ATTGTACCAACGTTCAGCTGACAT 1194011 Query 70339 GGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCA 70398 ||| || ||||| || || |||||||| ||| || | | || ||||||||||||| Sbjct 1194010 GGGTCTTGGTGTTCCTTTCAACATTGCTTCTTATGCTTTACTCACTTACATGATTGCTCA 1193951 Query 70399 CATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTT 70458 | || || ||| ||| || | || || | ||||| || || || || || Sbjct 1193950 TGTCACGAATCTTAAAATTGGCGATTTTATTCATACACTCGGCGATGCGCATGTTTACTT 1193891 Query 70459 AAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCT 70518 ||||| || |||||||| || | ||| | ||||| | ||| | || ||||| | | Sbjct 1193890 GAATCATATTGAGCCATTGAAAGCACAAATTGAACGTGTGCCACGTCCATTTCCTCAATT 1193831 Query 70519 GGAGTTTGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAA 70578 || || ||| ||||||||||||||||| || || | || ||||| ||| | Sbjct 1193830 AAAGATTAAACGTCAAGTTGAAAATATTGACGACTTCAAATTTGAGGATTTCGAAATTAT 1193771 Query 70579 AGGTTACGATCCATACCC 70596 || |||||||| ||||| Sbjct 1193770 TGGCTACGATCCTTACCC 1193753 >seq2 Length=1318413 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || ||||| ||||| ||||| ||| | ||| | || | ||||||||||| | ||| Sbjct 922111 CAAGGTGGCAACAAACGTCCAGGAGCTTTCGCCATTTATCTTGAACCTTGGCATGGCGAC 922170 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 ||||||| || | || || |||||| |||| ||||| || ||||| | ||| Sbjct 922171 ATTTTTGAGTTCCTTGATTTGAAGAAAAACACTGGAAAAGAAGAAGCTCGAGCTCGTGAC 922230 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATG 97031 |||| ||||| || ||| | || |||||||| ||| Sbjct 922231 ATGTTCTATGCTCTTTGGATCCCCGATTTGTTTATG 922266 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || ||||| ||||| ||||| ||| | ||| | || | ||||||||||| | ||| Sbjct 930228 CAAGGTGGCAACAAACGTCCAGGAGCTTTCGCCATTTATCTTGAACCTTGGCATGGCGAC 930287 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 ||||||| || | || || |||||| |||| ||||| || ||||| | ||| Sbjct 930288 ATTTTTGAGTTCCTTGATTTGAAGAAAAACACTGGAAAAGAAGAAGCTCGAGCTCGTGAC 930347 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATG 97031 |||| ||||| || ||| | || |||||||| ||| Sbjct 930348 ATGTTCTATGCTCTTTGGATCCCCGATTTGTTTATG 930383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740839077627880