Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq48 111 1e-19 >seq48 Length=1955607 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| || || |||||| || || || |||||| | | ||| |||| Sbjct 847605 AACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTAAGAGTACGTCCATCC 847546 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || ||||| || || || || ||||| |||||||| || | || | |||||||||||| Sbjct 847545 TCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGGAATGCCTTCTTTATCT 847486 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| ||| |||||| | ||| ||||| | || || || || | || || ||| Sbjct 847485 TGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGTTCAACCTCAAGGGTGATGGTT 847426 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATGT 44123 ||||| || || || || || || |||||||||| Sbjct 847425 TTACCCGTCAATGTTTTGACGAAGATTTGCATGT 847392 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || ||||||||||| || || ||| | || ||| |||| || Sbjct 645802 ACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTGCGCCCATCTTCG 645743 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||| ||||| || || ||||| ||||||||||| | || | ||||| || ||| Sbjct 645742 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGG 645683 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| ||||| | ||| || |||| || || || || | || || || || Sbjct 645682 ATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCAAGAGTGATAGTCTTG 645623 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || ||||| || || || ||||||||| Sbjct 645622 CCAGTCAAAGTTTTAACGAAGATTTGCATG 645593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354674852304924