Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq43 232 6e-56 >seq43 Length=2293527 Score = 232 bits (256), Expect = 6e-56 Identities = 487/719 (68%), Gaps = 8/719 (1%) Strand=Plus/Plus Query 12798 AACTTTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACA 12857 || ||||||||||| ||| || | || |||| || ||||| ||| || Sbjct 2197222 AAATTTAAAAATCAGCATCAAGTGTGAAAACATTGTCAAGACGATTTGCCATCACTCCAG 2197281 Query 12858 TTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATAT 12917 ||||||||| || | |||| | ||||| || ||||||||||| || || | ||| || Sbjct 2197282 CTTTTTGATACTCTCCAACTTTCTTTTCGAAGAAGTTTGTTTTACCCTCAAGCGAGATGA 2197341 Query 12918 TTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC-CCTAATTCTAGT 12976 ||||| || ||||||||| || | ||| ||||||| || || ||||| Sbjct 2197342 GCTCCATGAAGCTGAAAGGATTCTTTGTGTTGTAG-ATTTTTTCGACTCCCAATTCACCG 2197400 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | | | |||||||||||||| ||||| || ||| | || || ||||| || | Sbjct 2197401 AGAAGACGATCAGCAACAAACTCAATGTATTGAGACATCAGTTCGCAATTCATGCCCAAC 2197460 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 | || ||||||| || || || | || | || ||| || | ||| ||||| || Sbjct 2197461 ATGTTAACAGGCAAGGCATCGGTGAGGAATTCTTGTTCAATTTTAACAGCTTCTGAAATG 2197520 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTT--GATA-GATGCTTAAACATCATACAT 13153 || || ||| |||||| | ||| || || || | |||| ||||||| ||| Sbjct 2197521 ATTTCGACAATT-CGTTCTTT--TGGTGGTTTCTGGACAAGATGACGGAACATCAAACAA 2197577 Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 ||||||||||| ||||| ||||| || | || | || || |||||||| | ||| Sbjct 2197578 GCAAAATCACAATGCAAGCCTTCGTCACGTGAAATCAATTCATTGGAAAATGTCAATCCC 2197637 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273 ||||| | || ||||| |||||||||||||| |||||||| || || || ||| Sbjct 2197638 GGCATCAATCCACGTTTCTTAATCCAAAATATGGCAGCAAAACTTCCACTGAAGAAAATT 2197697 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC 13333 ||||||||||||||||| || || | ||||| ||| | | ||| ||||| ||| Sbjct 2197698 CCTTCAACTGCTGCAAATGCAATAATTCTTTCCCCAAAGTTGGCATTCTTACTGCTGATC 2197757 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 || || | ||||||| || || | || || || || |||| | ||||| ||| Sbjct 2197758 CAGTTAATTGCCCAGTCAGCCTTCTTCTTCACACATGGCAATGTTTCGACAGCGTTGAAT 2197817 Query 13394 AAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCT 13453 ||| | | || || || | ||| ||||| || || | ||| ||||||||| Sbjct 2197818 AAAAATTCACGCTCTTTGGAGTTTCGAATGTAAGTTTCAATAAGCAAGGAATACATTTCA 2197877 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG 13512 ||||| | ||| ||||| |||||||| ||||||||||| || | || || | ||||| Sbjct 2197878 GAATGTACATTCTCCATAGCTATTTGAAAACCATAAAAGCAGCGTGCTTCAGTAACCTG 2197936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430857582513726