Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq55 159 8e-34 seq48 123 6e-23 >seq55 Length=2529122 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||| ||||| |||||||| ||||||||| ||||| | ||||||| Sbjct 2062112 AGCACAAGATGAAGTGTGGATTCCTTCTGAATGTTATAGTCACTAAGAGTACGACCGTCT 2062053 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 |||| ||| ||||||||||| || | | || ||||| ||||| || ||||| || || Sbjct 2062052 TCTAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTGTCT 2061993 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || |||||||| | ||||| || || || || || || |||||| Sbjct 2061992 TGGATCTTAGCCTTGACATTTTCAATTGTATCTGATGGCTCGACTTCGAGAGTGATAGTC 2061933 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| || ||||| || || || ||||||||| Sbjct 2061932 TTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTTG 2061897 >seq48 Length=1955607 Score = 123 bits (136), Expect = 6e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| | ||| || |||||||| || || || || ||||| | || || |||| ||| Sbjct 847597 ATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTAAGAGTACGTCCATCCTCTAATTG 847538 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 || ||||| || || | | || ||||| || || || ||||||||||| |||||||| Sbjct 847537 CTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGGAATGCCTTCTTTATCTTGAATCTT 847478 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 |||||| ||||| || | ||||| ||||| ||||| || || || || ||||| || Sbjct 847477 TGCTTTGACATTCTCAATCGTATCCGATGGTTCAACCTCAAGGGTGATGGTTTTACCCGT 847418 Query 104536 AAGTGTTTTTACAAATATCTGCATTTTG 104563 | |||||| || || || ||||| ||| Sbjct 847417 CAATGTTTTGACGAAGATTTGCATGTTG 847390 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||| || || || ||||| | ||| | ||| ||||| ||||| || ||||| || Sbjct 647380 TCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCAGCGAAG 647321 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | || || || || || ||||||||||| || || || || ||||| || ||| Sbjct 647320 ATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTT 647261 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| || ||||| || || || || || ||||| ||||| | ||||| || Sbjct 647260 TCGATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACG 647201 Query 104549 AATATCTGCAT 104559 || || ||||| Sbjct 647200 AAGATTTGCAT 647190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151047841285204