Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq63 122 1e-22 seq54 86.0 7e-12 >seq63 Length=2199633 Score = 122 bits (134), Expect = 1e-22 Identities = 287/427 (67%), Gaps = 10/427 (2%) Strand=Plus/Plus Query 6829 ATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATA 6888 ||||||| || |||| ||| ||||| || || ||||||||||| || || ||| | | Sbjct 1193882 ATATGATTCAAGTAAACATGCGCATCGCCGAGTGTATGAATAAAATCGCCAATTTTAAGA 1193941 Query 6889 TCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACA 6948 | | |||||||| | || || | ||| ||||||||||| | || ||||| ||| Sbjct 1193942 TTCGTGACATGAGCAATCATGTAAGTGAGTAAAGCATAAGAAGCAATGTTGAAAGGAACA 1194001 Query 6949 CCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAAT-ATTGTCTATAGC 7007 || | ||||| || ||||| | ||| || |||||||| ||| | | || | Sbjct 1194002 CCAAGACCCATGTCAGCTGAACGTTGGTACAATTGACAA-CTAAGCTCACCATCAGCGAC 1194060 Query 7008 ATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGA--TGGA 7065 ||||||||| ||| |||||| || || || | | || ||| || |||| Sbjct 1194061 ATAAAATTGCACCAAGCAATGACAAGGTGGCAATGC--CATGTCGGGAATCTGAATTGGA 1194118 Query 7066 TTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTT--ATAA 7123 |||||||| ||||| | ||| || | ||| | |||||| |||| | || ||| |||| Sbjct 1194119 TTCCAAGCTGTCATGATAATGCGACGGTCAGTGGGATTTCTTTT--AATTCGTTCGATAA 1194176 Query 7124 TTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAG 7183 | | | ||| || || || | ||| |||| | || || | ||| | || Sbjct 1194177 CTTCCTTCAGTTGGTCGATTCCTTTACCAGTGTAATCATCATTGCATGTGCCATATTCAG 1194236 Query 7184 CTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGAT 7243 | |||||||| | ||| ||||| ||||||| || || |||||||| | | |||||| Sbjct 1194237 CACCAAAATGACGCCACTGAAAGCCATAAACTGGTCCCAAATCACCAACCTGACGATGTG 1194296 Query 7244 TAAATCC 7250 |||||| Sbjct 1194297 GAAATCC 1194303 >seq54 Length=4029443 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 164836 TTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTA 164895 || ||||| ||| | || | || ||||| |||||| || | |||||||| ||||| Sbjct 557552 TTGAATAACATTCTGGTTATTGGCATGACAAACCGAAGAGACATGATTGATGAAGCTTTG 557611 Query 164896 TTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGC 164955 |||||||| |||||||||||| || |||| ||||| | ||||| | ||| ||| | Sbjct 557612 TTACGACCAGGTCGATTAGAAGTGCAAATGGAAATCAGTTTACCTAATGAAGCTGGAAGA 557671 Query 164956 CTTCAAATTTTAAAAGTTCA 164975 |||||||| | || |||| Sbjct 557672 GTTCAAATTCTCAACATTCA 557691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595695003670800