Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq48 156 4e-33 seq37 143 2e-29 seq889 120 3e-22 seq55 107 2e-18 >seq48 Length=1955607 Score = 156 bits (172), Expect = 4e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| |||||||| ||||||||||| | ||| || ||||||| |||| | ||| || Sbjct 646030 ACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCTTCG 645971 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || ||||| | ||||| || | |||||||||||||||||| ||||| ||||| | Sbjct 645970 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGG 645911 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| || |||||| ||| ||||||| | || || |||| |||||||| || Sbjct 645910 ATTTTGGCTTTGACGTTTTCGATGGTGTCAGATGGTTCAACTTCAAGGGTGATGGTCTTG 645851 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | ||| || || ||||| ||||||| Sbjct 645850 CCAGTCAAAGTCTTGACGAAGATTTGCATGC 645820 Score = 147 bits (162), Expect = 2e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| |||||||| ||||| ||||| | ||| || ||||||| |||| ||| || Sbjct 646714 ACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 646655 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || ||||| | ||||| || | |||||| ||||| ||||| ||||| || || | Sbjct 646654 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGG 646595 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || |||||||||||| ||| ||||||| | ||||| |||| |||||||| || Sbjct 646594 ATCTTTGCCTTGACGTTTTCGATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTG 646535 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | |||||| || ||||| ||||||| Sbjct 646534 CCAGTCAAAGTTTTGACGAAGATTTGCATGC 646504 Score = 138 bits (152), Expect = 1e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| |||||||| ||||||||||| | ||| || ||||||| |||| ||| || Sbjct 621784 ACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 621843 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| ||||| | ||||| || | |||||| ||||| ||||| ||||| ||||| | Sbjct 621844 AGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 621903 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || |||||||| || | | ||||| | | || || |||| |||||||| || Sbjct 621904 ATCTTTGCCTTAACATTTTCAATCGTGTCTGATGGTTCAACTTCAAGAGTGATGGTCTTG 621963 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | |||||| || ||||| ||||||| Sbjct 621964 CCAGTCAAAGTTTTGACGAAGATTTGCATGC 621994 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| |||||||| ||||||||||| | ||| || ||||||| |||| ||| || Sbjct 622240 ACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 622299 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || ||||| | ||||| || | |||||| ||||| ||||| ||||| ||||| | Sbjct 622300 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 622359 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || |||||||||||| | | ||||||| | ||||| |||| ||||| || || Sbjct 622360 ATCTTTGCCTTGACGTTTTCAATGGTGTCAGATGGTTCGACTTCAAGGGTGATAGTCTTG 622419 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 || || | |||||| || || || ||||| || Sbjct 622420 CCGGTCAAAGTTTTGACGAAAATTTGCATTCT 622451 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| |||||||| ||||||||||| | ||| || ||||||| |||| ||| || Sbjct 646258 ACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 646199 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || || | ||||| || | |||||| ||||||||||| ||||| ||||| | Sbjct 646198 AGTTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGG 646139 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || |||||||| || | | ||||| | | || || |||| |||||||| || Sbjct 646138 ATCTTTGCCTTAACATTCTCAATGGTGTCGGATGGTTCAACCTCAAGGGTGATGGTCTTG 646079 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | |||||| || ||||| ||||||| Sbjct 646078 CCAGTCAAAGTTTTGACGAAGATTTGCATGC 646048 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| |||||||| ||||||||||| | ||| || ||||||| |||| ||| || Sbjct 646942 ACCAAATGCAAAGTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 646883 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || ||||| | ||||| || | |||||| ||||| ||||| ||||| ||||| | Sbjct 646882 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 646823 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || |||||||| || | | ||||| | | || || |||| |||||||| || Sbjct 646822 ATCTTTGCCTTAACATTTTCAATCGTGTCTGATGGTTCAACTTCAAGAGTGATGGTCTTG 646763 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | |||||| || ||||| ||||||| Sbjct 646762 CCAGTCAAAGTTTTGACGAAGATTTGCATGC 646732 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| |||||||| ||||| ||||| | ||| || ||||||| |||| ||| || Sbjct 645802 ACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTGCGCCCATCTTCG 645743 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || ||||| | ||||| || | |||||| ||||| ||||| ||||| ||||| | Sbjct 645742 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGG 645683 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||||||||||| | | ||||| | | || || |||| ||||| || || Sbjct 645682 ATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCAAGAGTGATAGTCTTG 645623 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 ||||| | |||||| || ||||| |||||||| Sbjct 645622 CCAGTCAAAGTTTTAACGAAGATTTGCATGCT 645591 Score = 123 bits (136), Expect = 2e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 || ||||| | ||| || ||||||| |||| ||| || || || || || | ||| Sbjct 647380 TCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCAGCGAAG 647321 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || || | |||||| ||||| ||||| ||||||||||| | ||||| || |||||| Sbjct 647320 ATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTT 647261 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 ||| ||||||| | ||||| |||| |||||||| || ||||| | |||||| || Sbjct 647260 TCGATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACG 647201 Query 94997 AAGATCTGCATGC 95009 ||||| ||||||| Sbjct 647200 AAGATTTGCATGC 647188 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||||||||| || | || || || || || | ||| |||||||| | ||| | Sbjct 847608 CGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTAAGAGTACGTCCA 847549 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| | || || || | ||||| || | |||||||||||| ||||| |||||||| Sbjct 847548 TCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGGAATGCCTTCTTTA 847489 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| ||||| ||||| | | || || | | || || |||| |||||| Sbjct 847488 TCTTGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGTTCAACCTCAAGGGTGATG 847429 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||| || || | ||||| || ||||| |||||| Sbjct 847428 GTTTTACCCGTCAATGTTTTGACGAAGATTTGCATG 847393 >seq37 Length=1894237 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| |||||||| ||||||||||| | ||| || ||||||| |||| | ||| || Sbjct 798730 ACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGGCCATCTTCG 798789 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || ||||| | ||||| || | |||||||||||| ||||| ||||| ||||| | Sbjct 798790 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGG 798849 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||||||||||| | | ||||| | | || || |||| ||||| || || Sbjct 798850 ATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCAAGAGTGATAGTCTTG 798909 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 ||||| | |||||| || ||||| |||||||| Sbjct 798910 CCAGTCAAAGTTTTAACGAAGATTTGCATGCT 798941 Score = 141 bits (156), Expect = 8e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || ||||||||||| | ||| || ||||||| |||| ||| || Sbjct 798274 ACCAAATGCAATGTTGATTCCTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 798333 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || ||||| | ||| | || | |||||| ||||| ||||| ||||| || || | Sbjct 798334 AGTTGCTTTCCAGCGAAGTTCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGG 798393 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || |||||||||||| ||| ||||||| | ||||| |||| |||||||| || Sbjct 798394 ATCTTTGCCTTGACGTTTTCGATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTG 798453 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | |||||| || ||||| ||||||| Sbjct 798454 CCAGTCAAAGTTTTGACGAAGATTTGCATGC 798484 >seq889 Length=890 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| |||||||| ||||||||||| | ||| || ||||||| |||| ||| || Sbjct 296 ACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCG 237 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || ||||| | ||||| || | |||||| ||||| ||||| ||||| ||||| | Sbjct 236 AGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGG 177 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || |||||| | | ||||| | | || || |||| ||||| || || Sbjct 176 ATCTTGGCTTTGACGTTTTCAATGGTGTCCGATGGTTCAACTTCAAGAGTGATAGTCTTG 117 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||| || || ||||| ||||| Sbjct 116 CCAGTCAAAGTCTTGACGAAGATTTGCAT 88 >seq55 Length=2529122 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | |||||| || || | ||| || || | || ||||| Sbjct 2062097 GTGGATTCCTTCTGAATGTTATAGTCACTAAGAGTACGACCGTCTTCTAATTGCTTTCCA 2062038 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || | |||||||||||||||||||||||| ||||| | || || |||||| Sbjct 2062037 GCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTGTCTTGGATCTTAGCCTTG 2061978 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | || || | | ||||| || | ||||| || || ||||| |||||| Sbjct 2061977 ACATTTTCAATTGTATCTGATGGCTCGACTTCGAGAGTGATAGTCTTGCCAGTGAGAGTT 2061918 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| ||||| ||||| Sbjct 2061917 TTCACGAAGATTTGCAT 2061901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448158040702680