Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq48 118 1e-21 seq889 107 2e-18 seq37 107 2e-18 seq14265 86.0 6e-12 seq2 82.4 7e-11 >seq48 Length=1955607 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| ||||| | || ||||| || || |||||||||||||| Sbjct 847620 CCACCACGAAGACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTA 847561 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||||| ||||| || ||| |||| ||||| ||||| || || || Sbjct 847560 AGAGTACGTCCATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGCGGA 847501 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||| | | ||| |||| | ||| | ||||| | | || | Sbjct 847500 ATGCCTTCTTTATC-TTGAATCTTTGCTTTGACATTCTCAATCGTATCCGATGGTTCAAC 847442 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||||||||| || | ||||| ||||| || |||||| Sbjct 847441 CTCAAGGGTGATGGTTTTACCCGTCAATGTTTTGACGAAGATTTGCATG 847393 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||| || || ||||| | || || || |||||||||||||| ||||| Sbjct 645821 GCCACCGCGAAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCT 645762 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || || ||||| || ||| |||| ||||| |||||||| || || Sbjct 645761 CAAAGTGCGCCCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGG 645702 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| ||| || ||||| | || | || || | | || | Sbjct 645701 AATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCAAC 645642 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || || || | |||||| ||||| || |||||| Sbjct 645641 TTCAAGAGTGATAGTCTTGCCAGTCAAAGTTTTAACGAAGATTTGCATG 645593 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || ||||| | || || || |||||||||||||| ||||| Sbjct 646733 GCCACCACGGAGACGGAGAACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCT 646674 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || || ||||| || ||| |||| ||||| |||||||| || || Sbjct 646673 CAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGG 646614 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| || || ||| || ||||| | || | || || | | |||| Sbjct 646613 AATTCCTTCCTTATCTTGGATCTTTGCCTTGACGTTTTCGATGGTGTCAGATGGTTCGAC 646554 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || | |||||| ||||| || |||||| Sbjct 646553 TTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCATG 646505 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 || ||||| |||||||| ||||||| ||||| || || || |||||||| ||| || Sbjct 647380 TCTTTTTGGATGTTGTAGTCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCAGCGAAG 647321 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || ||||| |||||||| || || |||||||||||||| |||||| |||| | Sbjct 647320 ATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTT 647261 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | || || | | |||| || | ||| | ||| || || || | |||||| ||| Sbjct 647260 TCGATGGTGTCAGATGGTTCGACTTCAAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACG 647201 Query 131224 AAAATCTGCATG 131235 || || |||||| Sbjct 647200 AAGATTTGCATG 647189 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||| | || | ||||| ||| ||||| | || ||||| || || |||||||||||||| Sbjct 850890 CCAACACGAAGACGCAACACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAATCGCTA 850831 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||||| ||||| || ||| |||| ||||| ||||| || || || Sbjct 850830 AGAGTACGTCCATCCTCTAATTGCTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGA 850771 Query 131128 ATTCCTTCTTT 131138 || |||||||| Sbjct 850770 ATGCCTTCTTT 850760 >seq889 Length=890 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || || ||||||||||||||||| |||||| Sbjct 314 CCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCGCTC 255 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || || ||||| || ||| |||| ||||| |||||||| || || Sbjct 254 AAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGGGGGA 195 Query 131128 ATTCCTTCTTTGTC 131141 |||||||| ||||| Sbjct 194 ATTCCTTCCTTGTC 181 >seq37 Length=1894237 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || ||||| | || || ||||||||||||||||| ||||| Sbjct 798711 GCCACCACGAAGACGGAGAACCAAATGCAAAGTTGATTCCTTTTGAATGTTGTAGTCGCT 798770 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || || ||||| || ||| |||| ||||| ||||| || || || Sbjct 798771 CAAAGTGCGGCCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGG 798830 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| ||| || ||||| | || | || || | | || | Sbjct 798831 AATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTTTCAATGGTGTCTGATGGTTCAAC 798890 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || || || | |||||| ||||| || |||||| Sbjct 798891 TTCAAGAGTGATAGTCTTGCCAGTCAAAGTTTTAACGAAGATTTGCATG 798939 >seq14265 Length=158 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || ||||| | || || || |||||||||||||| ||||| Sbjct 42 GCCACCACGTAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTGTAGTCGCT 101 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123 || ||||| || || || ||||| || ||| |||| ||||| |||||||| || Sbjct 102 CAAAGTGCGACCATCTTCGAGTTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCTGG 158 >seq2 Length=1318413 Score = 82.4 bits (90), Expect = 7e-11 Identities = 164/240 (68%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 145916 GGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACC 145975 |||||||||| ||||| | || || | || || |||||||||||| || | | Sbjct 930424 GGACACATCAAAGACCACATTCCATTACTTTCAACACGACGCATAAACAAATCGGGGATC 930365 Query 145976 CACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAA 146035 || || || || | || ||| || ||| || || || ||||| ||||||| Sbjct 930364 CAAAGAGCATAGAACATGTCACGAGCTCGAGCTTCTTCTTTTCCAGTGTTTTTCTTCAAA 930305 Query 146036 TTAAGCACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTT 146094 | ||| | ||| | | ||||| | ||||| ||||||| ||| | ||||| |||||| Sbjct 930304 TCAAGGA-ACTCAAAAATGTCGCCATGCCAAGGTTCAAGATAAATGGCGAAAGCTCCTGG 930246 Query 146095 TCGT---TTGCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 ||| |||||||| ||||| || | ||| | |||||||| | || | || |||||| Sbjct 930245 ACGTTTGTTGCCACCTTGGTCGACATAACGAGCTGTGTTGTTATAAACTCTCAGCATGGG 930186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471872594497920